Mercurial > repos > iuc > package_samtools_1_0

comparison tool_dependencies.xml @ 1:da217d52e81c draft

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Uploaded
author iuc
date Sat, 06 Sep 2014 03:59:05 -0400
parents bb194c224177
children 2e412b30e3b6
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0:bb194c224177 1:da217d52e81c
17 <package name="zlib" version="1.2.8"> 17 <package name="zlib" version="1.2.8">
18 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 18 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
19 </package> 19 </package>
20 <action type="download_by_url">http://downloads.sourceforge.net/project/samtools/samtools/1.0/samtools-1.0.tar.bz2</action> 20 <action type="download_by_url">http://downloads.sourceforge.net/project/samtools/samtools/1.0/samtools-1.0.tar.bz2</action>
21 <action type="set_environment_for_install"> 21 <action type="set_environment_for_install">
22 <repository changeset_revision="f6edc6908585" name="package_ncurses_5_9" owner="iuc" toolshed="https://gaius.bx.psu.edu"> 22 <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
23 <package name="ncurses" version="5.9" /> 23 <package name="ncurses" version="5.9" />
24 </repository> 24 </repository>
25 <repository changeset_revision="b11233fcdc87" name="package_zlib_1_2_8" owner="iuc" toolshed="https://gaius.bx.psu.edu"> 25 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
26 <package name="zlib" version="1.2.8" /> 26 <package name="zlib" version="1.2.8" />
27 </repository> 27 </repository>
28 </action> 28 </action>
29 <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action> 29 <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action>
30 <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action> 30 <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action>