Mercurial > repos > iuc > package_samtools_1_0

comparison tool_dependencies.xml @ 8:9f8c81d36fec draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_samtools_1_0 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Thu, 16 Jul 2015 13:30:55 -0400
parents 0483649252f7
children a2b05f6917d5
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7:0483649252f7 8:9f8c81d36fec
24 </repository> 24 </repository>
25 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 25 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
26 <package name="zlib" version="1.2.8" /> 26 <package name="zlib" version="1.2.8" />
27 </repository> 27 </repository>
28 </action> 28 </action>
29 <action type="shell_command">sed -i -e 's/-lcurses/-lncurses/' Makefile</action> 29 <action type="shell_command">sed -i.bak -e 's/-lcurses/-lncurses/' Makefile</action>
30 <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action> 30 <action type="shell_command">sed -i.bak -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action>
31 <action type="shell_command">make</action> 31 <action type="shell_command">make</action>
32 <action type="move_file"> 32 <action type="move_file">
33 <source>samtools</source> 33 <source>samtools</source>
34 <destination>$INSTALL_DIR/bin</destination> 34 <destination>$INSTALL_DIR/bin</destination>
35 </action> 35 </action>