Mercurial > repos > iuc > package_samtools_0_1_19

comparison tool_dependencies.xml @ 5:40250a414486 draft

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author iuc
date Tue, 29 Apr 2014 14:06:22 -0400
parents 36aa94676939
children 632f1a03db92
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4:36aa94676939 5:40250a414486
11 <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> 11 <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
12 <package name="ncurses" version="5.9" /> 12 <package name="ncurses" version="5.9" />
13 </repository> 13 </repository>
14 </action> 14 </action>
15 <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action> 15 <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action>
16 <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -L$NCURSES_LIB_PATH|g" Makefile</action> 16 <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action>
17 <action type="shell_command">make</action> 17 <action type="shell_command">make</action>
18 <action type="move_file"> 18 <action type="move_file">
19 <source>samtools</source> 19 <source>samtools</source>
20 <destination>$INSTALL_DIR/bin</destination> 20 <destination>$INSTALL_DIR/bin</destination>
21 </action> 21 </action>