Mercurial > repos > iuc > package_sailfish_0_7_2

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sailfish_0_7_2 commit 4c44b550f39ec90756c7bf5277fa1341de767bfd-dirty
author iuc
date Thu, 03 Sep 2015 14:19:13 -0400
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-1:000000000000 0:24d3cf4c966d
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="boost" version="1.53.0">
4 <repository changeset_revision="a3df665907d3" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6
7 <package name="sailfish" version="0.7.2">
8 <install version="1.0">
9 <actions_group>
10 <actions architecture="x86_64" os="linux">
11 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/releases/download/v0.7.2/SailfishBeta-0.7.2_Linux-x86-64.tar.gz</action>
12 <action type="move_directory_files">
13 <source_directory>.</source_directory>
14 <destination_directory>$INSTALL_DIR</destination_directory>
15 </action>
16 <action type="set_environment">
17 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable>
18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
19 </action>
20 </actions>
21 <actions architecture="x86_64" os="darwin">
22 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/releases/download/v0.7.2/SailfishBeta-0.7.2_OSX_10.10.tar.gz</action>
23 <action type="move_directory_files">
24 <source_directory>.</source_directory>
25 <destination_directory>$INSTALL_DIR</destination_directory>
26 </action>
27 <action type="set_environment">
28 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable>
29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
30 </action>
31 </actions>
32 <actions>
33 <!-- first action is always downloading -->
34 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/archive/v0.7.2.tar.gz</action>
35
36 <!-- populate the environment variables from the dependend repos -->
37 <action type="set_environment_for_install">
38 <repository changeset_revision="a3df665907d3" name="package_boost_1_53" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
39 <package name="boost" version="1.53.0" />
40 </repository>
41 </action>
42
43 <!-- PYTHONPATH_NUMPY is set in the numpy package -->
44 <action type="shell_command">
45 mkdir build &amp;&amp;
46 cd build &amp;&amp;
47 cmake .. -DBOOST_ROOT=$BOOST_ROOT_DIR -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR</action>
48 <action type="shell_command">cd ./build &amp;&amp; make </action>
49 <action type="shell_command">cd ./build &amp;&amp; make install</action>
50 <action type="set_environment">
51 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable>
52 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
53 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[BOOST_ROOT_DIR]/lib/</environment_variable>
54 </action>
55 </actions>
56 </actions_group>
57 </install>
58 <readme>Compiling sailfish requires cmake and C++11 compiler (usually gcc).</readme>
59 </package>
60 </tool_dependency>