Mercurial > repos > iuc > package_rpy2_2_7_5

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_7_5 commit d05e18d58eae218575d477c7cc34877aeb3108ab
author iuc
date Sat, 19 Dec 2015 03:28:17 -0500
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children 97dcc17a6566
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-1:000000000000 0:97b9362f0492
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="R" version="3.2.1">
4 <repository changeset_revision="c6ebd3a51334" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="readline" version="6.2">
7 <repository changeset_revision="618c94461551" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="rpy2" version="2.7.5">
10 <install version="1.0">
11 <actions>
12 <action sha256sum="0d88f7fff21fbef523c8678ed8f850a36052edca4ce702c62f234fdcb52de441" type="download_by_url">
13 https://depot.galaxyproject.org/software/rpy2/rpy2_2.7.5_src_all.tar.gz
14 </action>
15
16 <action type="set_environment_for_install">
17 <repository changeset_revision="618c94461551" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
18 <package name="readline" version="6.2" />
19 </repository>
20 <repository changeset_revision="c6ebd3a51334" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
21 <package name="R" version="3.2.1" />
22 </repository>
23 </action>
24
25 <action type="make_directory">$INSTALL_DIR/lib/python</action>
26 <action type="shell_command">
27 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
28 export LDFLAGS="-L$READLINE_LIB_PATH -lreadline" &amp;&amp;
29 export CPPFLAGS="-I$READLINE_INCLUDE_PATH" &amp;&amp;
30 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
31 </action>
32 <action type="set_environment">
33 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
34 </action>
35 </actions>
36 </install>
37 <readme>rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions.
38 http://rpy.sourceforge.net/rpy2.html
39 </readme>
40 </package>
41 </tool_dependency>