Mercurial > repos > iuc > package_rpy2_2_3_6
annotate tool_dependencies.xml @ 6:1c9469fd20a0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
| author | iuc |
|---|---|
| date | Tue, 22 Dec 2015 19:36:57 -0500 |
| parents | 29cf841df924 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="R_3_0_1" version="3.0.1"> | |
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1c9469fd20a0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
5
diff
changeset
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4 <repository changeset_revision="92e758fad736" name="package_r_3_0_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 6 <package name="readline" version="6.2"> | |
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1c9469fd20a0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
5
diff
changeset
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7 <repository changeset_revision="1007a3015bdb" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 8 </package> |
| 9 <package name="rpy2_2_3_6" version="2.3.6"> | |
| 10 <install version="1.0"> | |
| 11 <actions> | |
| 12 <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.3.6.tar.gz</action> | |
| 13 <action type="set_environment_for_install"> | |
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6
1c9469fd20a0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
5
diff
changeset
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14 <repository changeset_revision="1007a3015bdb" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 15 <package name="readline" version="6.2" /> |
| 16 </repository> | |
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6
1c9469fd20a0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
5
diff
changeset
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17 <repository changeset_revision="92e758fad736" name="package_r_3_0_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 18 <package name="R_3_0_1" version="3.0.1" /> |
| 19 </repository> | |
| 20 </action> | |
| 21 | |
| 22 <action type="shell_command"> | |
| 23 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | |
| 24 export LDFLAGS="-L$READLINE_LIB_PATH -lreadline" && | |
| 25 export CPPFLAGS="-I$READLINE_INCLUDE_PATH" && | |
| 26 python setup.py build --r-home $R_HOME --r-home-lib $R_HOME/lib install --install-lib $INSTALL_DIR/lib/python | |
| 27 </action> | |
| 28 <action type="set_environment"> | |
| 29 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
| 30 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[READLINE_LIB_PATH]</environment_variable> | |
| 31 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[RHOME]/lib</environment_variable> | |
| 32 </action> | |
| 33 </actions> | |
| 34 </install> | |
| 35 <readme>rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions. | |
| 36 http://rpy.sourceforge.net/rpy2.html | |
| 37 </readme> | |
| 38 </package> | |
| 39 </tool_dependency> |