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comparison tool_dependencies.xml @ 0:80fc859d5987

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Uploaded tool dependency definition.
author iuc
date Thu, 26 Mar 2015 12:45:39 -0400
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="rnastructure" version="5.7">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://depot.galaxyproject.org/package/source/RNAstructure-5.7.tgz</action>
7 <action type="shell_command">make</action>
8 <action type="shell_command">export INSTALL_DIR=$INSTALL_DIR ; make install</action>
9 <action type="set_environment">
10 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
11 </action>
12 </actions>
13 </install>
14 <readme>
15 <![CDATA[
16 RNAstructure is a complete package for RNA and DNA secondary structure
17 prediction and analysis. It includes algorithms for secondary structure
18 prediction, including facility to predict base pairing probabilities. It
19 also can be used to predict bimolecular structures and can predict the
20 equilibrium binding affinity of an oligonucleotide to a structured RNA
21 target. This is useful for siRNA design. It can also predict secondary
22 structures common to two, unaligned sequences, which is much more accurate
23 than single sequence secondary structure prediction. Finally, RNAstructure
24 can take a number of different types of experiment mapping data to constrain
25 or restrain structure prediction. These include chemical mapping, enzymatic
26 mapping, NMR, and SHAPE data.
27 ]]>
28 </readme>
29 </package>
30 </tool_dependency>