Mercurial > repos > iuc > package_rnashapes_2_1_6
annotate tool_dependencies.xml @ 1:a09d582726fe draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnashapes_2_1_6 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
| author | iuc |
|---|---|
| date | Fri, 09 Oct 2015 04:56:59 -0400 |
| parents | dedc05ca43be |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version='1.0' encoding='utf-8'?> |
| 2 <tool_dependency> | |
| 3 <package name="rnashapes" version="2.1.6"> | |
| 4 <install version="1.0"> | |
| 5 <actions_group> | |
| 6 <!-- Download the binaries for RNAshapes compatible with 32-bit OSX. --> | |
| 7 <actions os="darwin" architecture="i386"> | |
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a09d582726fe
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnashapes_2_1_6 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
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changeset
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8 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/RNAshapes/RNAshapes-2.1.6-osx.tar.gz</action> |
| 0 | 9 <action type="move_file"> |
| 10 <source>RNAshapes</source> | |
| 11 <destination>$INSTALL_DIR/bin/</destination> | |
| 12 </action> | |
| 13 </actions> | |
| 14 <!-- Download the binaries for RNAshapes compatible with 32-bit Linux (i386). --> | |
| 15 <actions os="linux" architecture="i386"> | |
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1
a09d582726fe
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnashapes_2_1_6 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
diff
changeset
|
16 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/RNAshapes/RNAshapes-2.1.6-i386-linux.tar.gz</action> |
| 0 | 17 <action type="move_file"> |
| 18 <source>RNAshapes</source> | |
| 19 <destination>$INSTALL_DIR/bin/</destination> | |
| 20 </action> | |
| 21 </actions> | |
| 22 <!-- Download the binaries for RNAshapes compatible with 32-bit Linux (i686). --> | |
| 23 <actions os="linux" architecture="i686"> | |
|
1
a09d582726fe
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnashapes_2_1_6 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
diff
changeset
|
24 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/RNAshapes/RNAshapes-2.1.6-i386-linux.tar.gz</action> |
| 0 | 25 <action type="move_file"> |
| 26 <source>RNAshapes</source> | |
| 27 <destination>$INSTALL_DIR/bin/</destination> | |
| 28 </action> | |
| 29 </actions> | |
| 30 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> | |
| 31 <actions> | |
|
1
a09d582726fe
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnashapes_2_1_6 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
diff
changeset
|
32 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/RNAshapes/RNAshapes-2.1.6.tar.gz</action> |
| 0 | 33 <action type="autoconf" /> |
| 34 </actions> | |
| 35 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
| 36 <action type="set_environment"> | |
| 37 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 38 </action> | |
| 39 </actions_group> | |
| 40 </install> | |
| 41 <readme> | |
| 42 Downloads the precompiled 32bit Linux, or Mac OS X RNAshapes | |
| 43 binaries, which is faster than performing a local compliation, | |
| 44 avoids any issues with build dependencies, and is more reproducible between | |
| 45 installations as there is no variability from the compiler or library versions. | |
| 46 | |
| 47 RNA shape abstraction maps structures to a tree-like domain of shapes, retaining adjacency and nesting of structural features, | |
| 48 but disregarding helix lengths. Shape abstraction integrates well with dynamic programming algorithms, | |
| 49 and hence it can be applied during structure prediction rather than afterwards. | |
| 50 This avoids exponential explosion and can still give us a non-heuristic and complete account of properties of the molecule's folding space. | |
| 51 | |
| 52 RNAshapes offers three powerful RNA analysis tools in one single software package: | |
| 53 | |
| 54 - Computation of a small set of representative structures of different shapes, complete in a well-defined sense. | |
| 55 - Computation of accumulated shape probabilities. | |
| 56 - Comparative prediction of consensus structures, as an alternative to the over-expensive Sankoff Algorithm. | |
| 57 | |
| 58 | |
| 59 For more details, see: | |
| 60 http://bibiserv.techfak.uni-bielefeld.de/rnashapes/ | |
| 61 </readme> | |
| 62 </package> | |
| 63 </tool_dependency> | |
| 64 |