Mercurial > repos > iuc > package_randfold_2_0

comparison tool_dependencies.xml @ 1:44ea4592f079 draft

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author iuc
date Wed, 18 Feb 2015 11:32:58 -0500
parents d44a316336e5
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0:d44a316336e5 1:44ea4592f079
22 </action> 22 </action>
23 </actions> 23 </actions>
24 </install> 24 </install>
25 <readme> 25 <readme>
26 26
27 RANDFOLD - A randsomization test for sequence secondary structure 27 RANDFOLD - A randsomization test for sequence secondary structure
28 Copyright (C) 2005 Eric Bonnet - Bioinformatics &amp;amp; Evolutionary Genomics - VIB 28 Copyright (C) 2005 Eric Bonnet - Bioinformatics &amp;amp; Evolutionary Genomics - VIB
29 ----------------------------------------------------------------------------- 29 -----------------------------------------------------------------------------
30 30
31 This is RANDFOLD version 2. The software compute the probability that, for a 31 This is RANDFOLD version 2. The software compute the probability that, for a
32 given sequence, the Minimum Free Energy (MFE) of the secondary structure is 32 given sequence, the Minimum Free Energy (MFE) of the secondary structure is
33 different from MFE computed with random sequences. 33 different from MFE computed with random sequences.
34 34
35 For more information, see the paper published in Bioinformatics: 35 For more information, see the paper published in Bioinformatics:
36 36
37 Bonnet E, Wuyts J, Rouze P, Van de Peer Y. 37 Bonnet E, Wuyts J, Rouze P, Van de Peer Y.
38 Evidence that microRNA precursors, unlike other non-coding RNAs, have lower 38 Evidence that microRNA precursors, unlike other non-coding RNAs, have lower
39 folding free energies than random sequences. 39 folding free energies than random sequences.
40 Bioinformatics. 2004 Nov 22;20(17):2911-7. 40 Bioinformatics. 2004 Nov 22;20(17):2911-7.
41 PMID: 15217813 41 PMID: 15217813
42 42
43 </readme> 43 </readme>