Mercurial > repos > iuc > package_r_3_2_1

changeset 14:77d439695328 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_2_1 commit 6e948a2ecc1da6479c3df18609ec42de643b4d0a
author iuc
date Fri, 13 May 2016 05:03:47 -0400
parents 9f31a291b305
children
files tool_dependencies.xml
diffstat 1 files changed, 11 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Jan 04 05:40:49 2016 -0500
+++ b/tool_dependencies.xml	Fri May 13 05:03:47 2016 -0400
@@ -4,7 +4,7 @@
         <install version="1.0">
             <actions_group>
                 <actions architecture="x86_64" os="linux">
-                    <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/R/R-3.2.1-Linux-x86_64.tar.gz</action>
+                    <action sha256sum="0a27c632b6aacacfd96264ec815dfef4a68bfa807c48d90fa1eb6600872199e0" type="download_by_url">https://depot.galaxyproject.org/software/r/r_3.2.1_linux_x64.tar.gz</action>
                     <action type="move_directory_files">
                         <source_directory>.</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
@@ -34,13 +34,13 @@
                 <actions>
                     <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz</action>
                     <package name="atlas" version="3.10.2">
-                        <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                        <repository changeset_revision="c47756a8136e" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
                     </package>
                     <package name="readline" version="6.3">
                         <repository changeset_revision="de22495ddf2b" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
                     </package>
                     <package name="libpng" version="1.6.7">
-                        <repository changeset_revision="3571cd50dda2" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                        <repository changeset_revision="d1a409e4f67d" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
                     </package>
                     <package name="cairo" version="1.12.14">
                         <repository changeset_revision="d1c32c313ad5" name="package_cairo_1_12_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
@@ -49,19 +49,19 @@
                         <repository changeset_revision="82d1a680686f" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
                     </package>
                     <package name="freetype" version="2.5.2">
-                        <repository changeset_revision="a2cc77cfe7fc" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                        <repository changeset_revision="22887dea4683" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
                     </package>
                     <package name="ncurses" version="6.0">
-                        <repository changeset_revision="bc016af62878" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                        <repository changeset_revision="15e2190c87ca" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
                     </package>
                     <package name="fontconfig" version="2.11.1">
-                        <repository changeset_revision="4b8a90926882" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                        <repository changeset_revision="e356ec1fdd7b" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
                     </package>
                     <action type="set_environment_for_install">
                         <repository changeset_revision="de22495ddf2b" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="readline" version="6.3" />
                         </repository>
-                        <repository changeset_revision="3571cd50dda2" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <repository changeset_revision="d1a409e4f67d" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="libpng" version="1.6.7" />
                         </repository>
                         <repository changeset_revision="d1c32c313ad5" name="package_cairo_1_12_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
@@ -70,13 +70,13 @@
                         <repository changeset_revision="82d1a680686f" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="pixman" version="0.32.6" />
                         </repository>
-                        <repository changeset_revision="a2cc77cfe7fc" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <repository changeset_revision="22887dea4683" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="freetype" version="2.5.2" />
                         </repository>
-                        <repository changeset_revision="bc016af62878" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <repository changeset_revision="15e2190c87ca" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="ncurses" version="6.0" />
                         </repository>
-                        <repository changeset_revision="4b8a90926882" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <repository changeset_revision="e356ec1fdd7b" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="fontconfig" version="2.11.1" />
                         </repository>
                     </action>
@@ -93,7 +93,7 @@
                     <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable>
                     <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
                     <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
-                    <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
+                    <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
                     <environment_variable action="prepend_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
                     <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>