Mercurial > repos > iuc > package_r_3_2_1

diff tool_dependencies.xml @ 6:08586b0d0d58 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_2_1 commit 533504857402146c837690aa731e4d6b9a8e14cb
author iuc
date Tue, 10 Nov 2015 05:53:43 -0500
parents 9bf8af8b27e8
children 6bed0c9acc5e
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line diff
--- a/tool_dependencies.xml	Mon Nov 09 08:52:27 2015 -0500
+++ b/tool_dependencies.xml	Tue Nov 10 05:53:43 2015 -0500
@@ -12,6 +12,7 @@
                     <action type="shell_command">
                         command -v gfortran || return 0
                         BUNDLED_LGF_CANON=$INSTALL_DIR/lib/libgfortran.so.3.0.0 &amp;&amp;
+                        BUNDLED_LGF_FQSO=$INSTALL_DIR/lib/libgfortran.so.3 &amp;&amp;
                         BUNDLED_LGF_VERS=`objdump -p $BUNDLED_LGF_CANON | grep GFORTRAN_1 | sed -r 's/.*GFORTRAN_1\.([0-9])+/\1/' | sort -n | tail -1` &amp;&amp;
                         echo 'program test; end program test' &gt; test.f90 &amp;&amp;
                         gfortran -o test test.f90 &amp;&amp;
@@ -20,7 +21,9 @@
                         LGF_VERS=`objdump -p $LGF_CANON | grep GFORTRAN_1 | sed -r 's/.*GFORTRAN_1\.([0-9])+/\1/' | sort -n | tail -1` &amp;&amp;
                         if [ $LGF_VERS -gt $BUNDLED_LGF_VERS ]; then
                             cp -p $BUNDLED_LGF_CANON ${BUNDLED_LGF_CANON}.bundled &amp;&amp;
-                            cp -p $LGF_CANON $BUNDLED_LGF_CANON
+                            cp -p $BUNDLED_LGF_FQSO ${BUNDLED_LGF_FQSO}.bundled &amp;&amp;
+                            cp -p $LGF_CANON $BUNDLED_LGF_CANON &amp;&amp;
+                            ln -s $BUNDLED_LGF_CANON BUNDLED_LGF_FQSO
                         fi
                     </action>
                     <action type="set_environment">