Mercurial > repos > iuc > package_r_3_2_1

comparison tool_dependencies.xml @ 14:77d439695328 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_2_1 commit 6e948a2ecc1da6479c3df18609ec42de643b4d0a
author iuc
date Fri, 13 May 2016 05:03:47 -0400
parents 9f31a291b305
children
comparison
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13:9f31a291b305 14:77d439695328
2 <tool_dependency> 2 <tool_dependency>
3 <package name="R" version="3.2.1"> 3 <package name="R" version="3.2.1">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions_group> 5 <actions_group>
6 <actions architecture="x86_64" os="linux"> 6 <actions architecture="x86_64" os="linux">
7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/R/R-3.2.1-Linux-x86_64.tar.gz</action> 7 <action sha256sum="0a27c632b6aacacfd96264ec815dfef4a68bfa807c48d90fa1eb6600872199e0" type="download_by_url">https://depot.galaxyproject.org/software/r/r_3.2.1_linux_x64.tar.gz</action>
8 <action type="move_directory_files"> 8 <action type="move_directory_files">
9 <source_directory>.</source_directory> 9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory> 10 <destination_directory>$INSTALL_DIR</destination_directory>
11 </action> 11 </action>
12 <action type="shell_command"> 12 <action type="shell_command">
32 </action> 32 </action>
33 </actions> 33 </actions>
34 <actions> 34 <actions>
35 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz</action> 35 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz</action>
36 <package name="atlas" version="3.10.2"> 36 <package name="atlas" version="3.10.2">
37 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 37 <repository changeset_revision="c47756a8136e" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
38 </package> 38 </package>
39 <package name="readline" version="6.3"> 39 <package name="readline" version="6.3">
40 <repository changeset_revision="de22495ddf2b" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 40 <repository changeset_revision="de22495ddf2b" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
41 </package> 41 </package>
42 <package name="libpng" version="1.6.7"> 42 <package name="libpng" version="1.6.7">
43 <repository changeset_revision="3571cd50dda2" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 43 <repository changeset_revision="d1a409e4f67d" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
44 </package> 44 </package>
45 <package name="cairo" version="1.12.14"> 45 <package name="cairo" version="1.12.14">
46 <repository changeset_revision="d1c32c313ad5" name="package_cairo_1_12_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 46 <repository changeset_revision="d1c32c313ad5" name="package_cairo_1_12_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
47 </package> 47 </package>
48 <package name="pixman" version="0.32.6"> 48 <package name="pixman" version="0.32.6">
49 <repository changeset_revision="82d1a680686f" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 49 <repository changeset_revision="82d1a680686f" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
50 </package> 50 </package>
51 <package name="freetype" version="2.5.2"> 51 <package name="freetype" version="2.5.2">
52 <repository changeset_revision="a2cc77cfe7fc" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 52 <repository changeset_revision="22887dea4683" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
53 </package> 53 </package>
54 <package name="ncurses" version="6.0"> 54 <package name="ncurses" version="6.0">
55 <repository changeset_revision="bc016af62878" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 55 <repository changeset_revision="15e2190c87ca" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
56 </package> 56 </package>
57 <package name="fontconfig" version="2.11.1"> 57 <package name="fontconfig" version="2.11.1">
58 <repository changeset_revision="4b8a90926882" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 58 <repository changeset_revision="e356ec1fdd7b" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
59 </package> 59 </package>
60 <action type="set_environment_for_install"> 60 <action type="set_environment_for_install">
61 <repository changeset_revision="de22495ddf2b" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 61 <repository changeset_revision="de22495ddf2b" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
62 <package name="readline" version="6.3" /> 62 <package name="readline" version="6.3" />
63 </repository> 63 </repository>
64 <repository changeset_revision="3571cd50dda2" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 64 <repository changeset_revision="d1a409e4f67d" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
65 <package name="libpng" version="1.6.7" /> 65 <package name="libpng" version="1.6.7" />
66 </repository> 66 </repository>
67 <repository changeset_revision="d1c32c313ad5" name="package_cairo_1_12_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 67 <repository changeset_revision="d1c32c313ad5" name="package_cairo_1_12_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
68 <package name="cairo" version="1.12.14" /> 68 <package name="cairo" version="1.12.14" />
69 </repository> 69 </repository>
70 <repository changeset_revision="82d1a680686f" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 70 <repository changeset_revision="82d1a680686f" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
71 <package name="pixman" version="0.32.6" /> 71 <package name="pixman" version="0.32.6" />
72 </repository> 72 </repository>
73 <repository changeset_revision="a2cc77cfe7fc" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 73 <repository changeset_revision="22887dea4683" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
74 <package name="freetype" version="2.5.2" /> 74 <package name="freetype" version="2.5.2" />
75 </repository> 75 </repository>
76 <repository changeset_revision="bc016af62878" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 76 <repository changeset_revision="15e2190c87ca" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
77 <package name="ncurses" version="6.0" /> 77 <package name="ncurses" version="6.0" />
78 </repository> 78 </repository>
79 <repository changeset_revision="4b8a90926882" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 79 <repository changeset_revision="e356ec1fdd7b" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
80 <package name="fontconfig" version="2.11.1" /> 80 <package name="fontconfig" version="2.11.1" />
81 </repository> 81 </repository>
82 </action> 82 </action>
83 <action type="autoconf">--with-tcltk --with-blas --with-lapack --without-aqua --with-readline --with-cairo --with-libpng --without-x --enable-R-shlib --disable-R-framework --libdir=$INSTALL_DIR/lib</action> 83 <action type="autoconf">--with-tcltk --with-blas --with-lapack --without-aqua --with-readline --with-cairo --with-libpng --without-x --enable-R-shlib --disable-R-framework --libdir=$INSTALL_DIR/lib</action>
84 <action type="make_install" /> 84 <action type="make_install" />
91 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable> 91 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable>
92 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable> 92 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable>
93 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable> 93 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable>
94 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> 94 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
95 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> 95 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
96 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> 96 <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
97 <environment_variable action="prepend_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> 97 <environment_variable action="prepend_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
98 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> 98 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
99 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 99 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
100 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> 100 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
101 </action> 101 </action>