Mercurial > repos > iuc > package_r_3_2_0

comparison tool_dependencies.xml @ 0:b689e15fa6fe draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_2_0 commit ec34b8cb4b41c0aa114475c262100409236d2bf2
author iuc
date Sun, 26 Jul 2015 13:50:10 -0400
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children 8feccd818d05
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-1:000000000000 0:b689e15fa6fe
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="R" version="3.2.0">
4 <install version="1.0">
5 <actions_group>
6 <actions architecture="x86_64" os="linux">
7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/R/R-3.2.0-Linux-x86_64.tar.gz</action>
8 <action type="move_directory_files">
9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory>
11 </action>
12 <action type="set_environment">
13 <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable>
14 <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable>
15 </action>
16 </actions>
17 <actions architecture="x86_64" os="darwin">
18 <action type="download_by_url">https://cran.rstudio.com/src/base/R-3/R-3.2.0.tar.gz</action>
19
20 <package name="readline" version="6.2">
21 <repository name="package_readline_6_2" owner="iuc" prior_installation_required="True" />
22 </package>
23 <package name="libpng" version="1.6.7">
24 <repository name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" />
25 </package>
26 <package name="cairo" version="1.12.14">
27 <repository name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" />
28 </package>
29 <package name="pixman" version="0.32.4">
30 <repository name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" />
31 </package>
32 <package name="freetype" version="2.5.2">
33 <repository name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" />
34 </package>
35 <package name="ncurses" version="5.9">
36 <repository name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" />
37 </package>
38
39 <action type="set_environment_for_install">
40 <repository name="package_readline_6_2" owner="iuc" prior_installation_required="True" >
41 <package name="readline" version="6.2" />
42 </repository>
43 <repository name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" >
44 <package name="libpng" version="1.6.7" />
45 </repository>
46 <repository name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" >
47 <package name="cairo" version="1.12.14" />
48 </repository>
49 <repository name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" >
50 <package name="pixman" version="0.32.4" />
51 </repository>
52 <repository name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" >
53 <package name="freetype" version="2.5.2" />
54 </repository>
55 <repository name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" >
56 <package name="ncurses" version="5.9" />
57 </repository>
58 </action>
59 <action type="shell_command"><![CDATA[
60 export LDFLAGS="-L$PNG_LIBS -L$NCURSES_LIB_PATH -L$READLINE_LIB_PATH" &&
61 export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" &&
62 export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" &&
63 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" &&
64 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" &&
65 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" &&
66 export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" &&
67 export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" &&
68 export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" &&
69 ./configure --with-tcltk \
70 --with-blas \
71 --with-lapack \
72 --with-readline \
73 --with-cairo \
74 --with-libpng \
75 --without-x \
76 --enable-R-shlib \
77 --disable-R-framework \
78 --libdir=$INSTALL_DIR/lib \
79 --prefix=$INSTALL_DIR
80 ]]></action>
81 <action type="make_install" />
82 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action>
83 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action>
84 </actions>
85 <action type="set_environment">
86 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable>
87 <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable>
88 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable>
89 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable>
90 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable>
91 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
92 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
93 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
94 <environment_variable action="set_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
95 <environment_variable action="set_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
96 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
97 </action>
98 </actions_group>
99 </install>
100 <readme>
101 R is a free software environment for statistical computing and graphics.
102 NOTE: See custom compilation options above.
103 </readme>
104 </package>
105 </tool_dependency>