Mercurial > repos > iuc > package_r_3_2_0

comparison tool_dependencies.xml @ 8:964bd2aedcc4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_2_0 commit 630c0f1ac3419322998d92a1653f260c664283ab
author iuc
date Mon, 04 Jan 2016 05:40:37 -0500
parents 88ca0346da36
children 7833b0ebf8d6
comparison
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7:88ca0346da36 8:964bd2aedcc4
15 </action> 15 </action>
16 </actions> 16 </actions>
17 <actions> 17 <actions>
18 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.0.tar.gz</action> 18 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.0.tar.gz</action>
19 <package name="readline" version="6.2"> 19 <package name="readline" version="6.2">
20 <repository changeset_revision="618c94461551" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 20 <repository changeset_revision="1007a3015bdb" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
21 </package> 21 </package>
22 <package name="libpng" version="1.6.7"> 22 <package name="libpng" version="1.6.7">
23 <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 23 <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
24 </package> 24 </package>
25 <package name="cairo" version="1.12.14"> 25 <package name="cairo" version="1.12.14">
30 </package> 30 </package>
31 <package name="freetype" version="2.5.2"> 31 <package name="freetype" version="2.5.2">
32 <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 32 <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
33 </package> 33 </package>
34 <package name="ncurses" version="5.9"> 34 <package name="ncurses" version="5.9">
35 <repository changeset_revision="d14cd2be7d8d" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 35 <repository changeset_revision="47ad4d7ba9fe" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
36 </package> 36 </package>
37 <action type="set_environment_for_install"> 37 <action type="set_environment_for_install">
38 <repository changeset_revision="618c94461551" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 38 <repository changeset_revision="1007a3015bdb" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
39 <package name="readline" version="6.2" /> 39 <package name="readline" version="6.2" />
40 </repository> 40 </repository>
41 <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 41 <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
42 <package name="libpng" version="1.6.7" /> 42 <package name="libpng" version="1.6.7" />
43 </repository> 43 </repository>
48 <package name="pixman" version="0.32.4" /> 48 <package name="pixman" version="0.32.4" />
49 </repository> 49 </repository>
50 <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 50 <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
51 <package name="freetype" version="2.5.2" /> 51 <package name="freetype" version="2.5.2" />
52 </repository> 52 </repository>
53 <repository changeset_revision="d14cd2be7d8d" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 53 <repository changeset_revision="47ad4d7ba9fe" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
54 <package name="ncurses" version="5.9" /> 54 <package name="ncurses" version="5.9" />
55 </repository> 55 </repository>
56 </action> 56 </action>
57 <action type="shell_command"> 57 <action type="autoconf">--with-tcltk --with-blas --with-lapack --with-readline --with-cairo --with-libpng --without-x --without-aqua --enable-R-shlib --disable-R-framework --libdir=$INSTALL_DIR/lib</action>
58 export LDFLAGS="-L$PNG_LIBS -L$NCURSES_LIB_PATH -L$READLINE_LIB_PATH" &amp;&amp;
59 export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" &amp;&amp;
60 export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" &amp;&amp;
61 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" &amp;&amp;
62 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" &amp;&amp;
63 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" &amp;&amp;
64 export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" &amp;&amp;
65 export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" &amp;&amp;
66 export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" &amp;&amp;
67 ./configure --with-tcltk \
68 --with-blas \
69 --with-lapack \
70 --with-readline \
71 --with-cairo \
72 --with-libpng \
73 --without-x \
74 --enable-R-shlib \
75 --disable-R-framework \
76 --libdir=$INSTALL_DIR/lib \
77 --prefix=$INSTALL_DIR
78 </action>
79 <action type="make_install" />
80 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action> 58 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action>
81 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action> 59 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action>
82 </actions> 60 </actions>
83 <action type="set_environment"> 61 <action type="set_environment">
84 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable> 62 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable>