Mercurial > repos > iuc > package_r_3_0_3

annotate tool_dependencies.xml @ 10:9a289bea9051 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit ade7dfd3c1f1c5369e338013c5ca2ec7115cafe6
author iuc
date Wed, 06 Jan 2016 14:31:04 -0500
parents 6f4eaf9dab65
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
2 <tool_dependency>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
3 <package name="R" version="3.0.3">
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
4 <install version="1.0">
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
5 <actions_group>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
6 <actions architecture="x86_64" os="darwin">
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
7 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/R/R-3.0.3-Darwin-x86_64.tgz</action>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
8 <action type="move_directory_files">
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
9 <source_directory>.</source_directory>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
10 <destination_directory>$INSTALL_DIR</destination_directory>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
11 </action>
2
9ff23e0b280b Uploaded updated tool dependency definition.
devteam
parents: 1
diff changeset
12 <action type="shell_command">sh $INSTALL_DIR/darwin_post_install.sh $INSTALL_DIR</action>
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
13 </actions>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
14 <actions architecture="x86_64" os="linux">
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
15 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/R/R-3.0.3-Linux-x86_64.tgz</action>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
16 <action type="move_directory_files">
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
17 <source_directory>.</source_directory>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
18 <destination_directory>$INSTALL_DIR</destination_directory>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
19 </action>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
20 <action type="set_environment">
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
21 <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
22 <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
23 </action>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
24 </actions>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
25 <actions>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
26 <package name="readline" version="6.2">
9
6f4eaf9dab65 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit 630c0f1ac3419322998d92a1653f260c664283ab
iuc
parents: 8
diff changeset
27 <repository changeset_revision="1007a3015bdb" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
28 </package>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
29 <package name="libpng" version="1.6.7">
2
9ff23e0b280b Uploaded updated tool dependency definition.
devteam
parents: 1
diff changeset
30 <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
31 </package>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
32 <package name="cairo" version="1.12.14">
2
9ff23e0b280b Uploaded updated tool dependency definition.
devteam
parents: 1
diff changeset
33 <repository changeset_revision="8f011e7388e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
34 </package>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
35 <package name="pixman" version="0.32.4">
10
9a289bea9051 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit ade7dfd3c1f1c5369e338013c5ca2ec7115cafe6
iuc
parents: 9
diff changeset
36 <repository changeset_revision="7056a708062b" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
37 </package>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
38 <package name="freetype" version="2.5.2">
2
9ff23e0b280b Uploaded updated tool dependency definition.
devteam
parents: 1
diff changeset
39 <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
40 </package>
9
6f4eaf9dab65 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit 630c0f1ac3419322998d92a1653f260c664283ab
iuc
parents: 8
diff changeset
41 <package name="ncurses" version="5.9">
6f4eaf9dab65 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit 630c0f1ac3419322998d92a1653f260c664283ab
iuc
parents: 8
diff changeset
42 <repository changeset_revision="47ad4d7ba9fe" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
6f4eaf9dab65 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit 630c0f1ac3419322998d92a1653f260c664283ab
iuc
parents: 8
diff changeset
43 </package>
10
9a289bea9051 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit ade7dfd3c1f1c5369e338013c5ca2ec7115cafe6
iuc
parents: 9
diff changeset
44 <package name="fontconfig" version="2.11.1">
9a289bea9051 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit ade7dfd3c1f1c5369e338013c5ca2ec7115cafe6
iuc
parents: 9
diff changeset
45 <repository changeset_revision="4b8a90926882" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
9a289bea9051 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit ade7dfd3c1f1c5369e338013c5ca2ec7115cafe6
iuc
parents: 9
diff changeset
46 </package>
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
47 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.0.3.tar.gz</action>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
48 <action type="set_environment_for_install">
9
6f4eaf9dab65 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit 630c0f1ac3419322998d92a1653f260c664283ab
iuc
parents: 8
diff changeset
49 <repository changeset_revision="1007a3015bdb" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
50 <package name="readline" version="6.2" />
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
51 </repository>
2
9ff23e0b280b Uploaded updated tool dependency definition.
devteam
parents: 1
diff changeset
52 <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
53 <package name="libpng" version="1.6.7" />
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
54 </repository>
2
9ff23e0b280b Uploaded updated tool dependency definition.
devteam
parents: 1
diff changeset
55 <repository changeset_revision="8f011e7388e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
56 <package name="cairo" version="1.12.14" />
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
57 </repository>
10
9a289bea9051 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit ade7dfd3c1f1c5369e338013c5ca2ec7115cafe6
iuc
parents: 9
diff changeset
58 <repository changeset_revision="7056a708062b" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
59 <package name="pixman" version="0.32.4" />
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
60 </repository>
2
9ff23e0b280b Uploaded updated tool dependency definition.
devteam
parents: 1
diff changeset
61 <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
62 <package name="freetype" version="2.5.2" />
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
63 </repository>
9
6f4eaf9dab65 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit 630c0f1ac3419322998d92a1653f260c664283ab
iuc
parents: 8
diff changeset
64 <repository changeset_revision="47ad4d7ba9fe" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
6f4eaf9dab65 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit 630c0f1ac3419322998d92a1653f260c664283ab
iuc
parents: 8
diff changeset
65 <package name="ncurses" version="5.9" />
6f4eaf9dab65 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit 630c0f1ac3419322998d92a1653f260c664283ab
iuc
parents: 8
diff changeset
66 </repository>
10
9a289bea9051 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit ade7dfd3c1f1c5369e338013c5ca2ec7115cafe6
iuc
parents: 9
diff changeset
67 <repository changeset_revision="4b8a90926882" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
9a289bea9051 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit ade7dfd3c1f1c5369e338013c5ca2ec7115cafe6
iuc
parents: 9
diff changeset
68 <package name="fontconfig" version="2.11.1" />
9a289bea9051 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit ade7dfd3c1f1c5369e338013c5ca2ec7115cafe6
iuc
parents: 9
diff changeset
69 </repository>
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
70 </action>
9
6f4eaf9dab65 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit 630c0f1ac3419322998d92a1653f260c664283ab
iuc
parents: 8
diff changeset
71 <action type="autoconf">--with-tcltk --with-blas --with-lapack --with-readline --with-cairo --with-libpng --without-x --without-aqua --enable-R-shlib --disable-R-framework --libdir=$INSTALL_DIR/lib</action>
3
e509651776fa Uploaded
iuc
parents: 2
diff changeset
72 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action>
e509651776fa Uploaded
iuc
parents: 2
diff changeset
73 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action>
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
74 </actions>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
75 <action type="set_environment">
1
232ebc8b1c0d Uploaded updated tool dependency definition.
devteam
parents: 0
diff changeset
76 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable>
232ebc8b1c0d Uploaded updated tool dependency definition.
devteam
parents: 0
diff changeset
77 <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable>
232ebc8b1c0d Uploaded updated tool dependency definition.
devteam
parents: 0
diff changeset
78 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable>
232ebc8b1c0d Uploaded updated tool dependency definition.
devteam
parents: 0
diff changeset
79 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable>
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
80 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable>
3
e509651776fa Uploaded
iuc
parents: 2
diff changeset
81 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR</environment_variable>
1
232ebc8b1c0d Uploaded updated tool dependency definition.
devteam
parents: 0
diff changeset
82 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
83 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
84 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
3
e509651776fa Uploaded
iuc
parents: 2
diff changeset
85 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable>
0
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
86 </action>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
87 </actions_group>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
88 </install>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
89 <readme>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
90 The precompiled versions of this package were built 2014-03-07.
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
91 R is a free software environment for statistical computing and graphics.
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
92 NOTE: See custom compilation options above.
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
93 </readme>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
94 </package>
facbaf9bc356 Uploaded tool dependency definition.
iuc
parents:
diff changeset
95 </tool_dependency>