Mercurial > repos > iuc > package_r_3_0_1

comparison tool_dependencies.xml @ 20:f3fb8dbdb047 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_1 commit 97a064489364118d108b0dd2cfb4d9bc53080837
author iuc
date Thu, 19 Nov 2015 14:13:09 -0500
parents e5c96827ef85
children 92e758fad736
comparison
equal deleted inserted replaced
19:e5c96827ef85 20:f3fb8dbdb047
2 <tool_dependency> 2 <tool_dependency>
3 <package name="readline" version="6.2"> 3 <package name="readline" version="6.2">
4 <repository changeset_revision="93fad0d5cab9" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="93fad0d5cab9" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="ncurses" version="5.9"> 6 <package name="ncurses" version="5.9">
7 <repository changeset_revision="387c0609c0b7" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="d5587dda75ff" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="R_3_0_1" version="3.0.1"> 9 <package name="R_3_0_1" version="3.0.1">
10 <install version="1.0"> 10 <install version="1.0">
11 <actions> 11 <actions>
12 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action> 12 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
13 <action type="set_environment_for_install"> 13 <action type="set_environment_for_install">
14 <repository changeset_revision="93fad0d5cab9" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 14 <repository changeset_revision="93fad0d5cab9" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
15 <package name="readline" version="6.2" /> 15 <package name="readline" version="6.2" />
16 </repository> 16 </repository>
17 <repository changeset_revision="387c0609c0b7" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 17 <repository changeset_revision="d5587dda75ff" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
18 <package name="ncurses" version="5.9" /> 18 <package name="ncurses" version="5.9" />
19 </repository> 19 </repository>
20 </action> 20 </action>
21
22 <action type="shell_command"> 21 <action type="shell_command">
23 ./configure CPPFLAGS=-I$READLINE_INCLUDE_PATH LDFLAGS="-L$READLINE_LIB_PATH -L$NCURSES_LIB_PATH -lreadline -lncurses" --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR/bin/ --datarootdir=$INSTALL_DIR/share/ 22 ./configure CPPFLAGS=-I$READLINE_INCLUDE_PATH LDFLAGS="-L$READLINE_LIB_PATH -L$NCURSES_LIB_PATH -lreadline -lncurses" --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR/bin/ --datarootdir=$INSTALL_DIR/share/
24 </action> 23 </action>
25 <action type="shell_command">make</action> 24 <action type="make_install" />
26 <action type="shell_command">make install</action>
27 <action type="set_environment"> 25 <action type="set_environment">
28 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR</environment_variable> 26 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR</environment_variable>
29 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> 27 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> 28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
31 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable> 29 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable>