Mercurial > repos > iuc > package_python_2_7_scipy_0_16

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
author iuc
date Thu, 17 Sep 2015 16:18:09 -0400
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children d23e7f0e5b3c
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-1:000000000000 0:528eaee7552d
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="atlas" version="3.10.2">
4 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="numpy" version="1.9">
7 <repository changeset_revision="8d42102c4e36" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="python" version="2.7.10">
10 <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="scipy" version="0.16">
13 <install version="1.0">
14 <actions>
15 <action type="setup_python_environment">
16 <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
17 <package name="python" version="2.7.10" />
18 </repository>
19 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
20 <package name="atlas" version="3.10.2" />
21 </repository>
22 <repository changeset_revision="8d42102c4e36" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
23 <package name="numpy" version="1.9" />
24 </repository>
25 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
26 <package md5sum="eb95dda0f36cc3096673993a350cde77">https://pypi.python.org/packages/source/s/scipy/scipy-0.16.0.tar.gz</package>
27 </action>
28 <action type="set_environment">
29 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
31 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
32 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
33 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
34 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/atlas</environment_variable>
35 <environment_variable action="set_to" name="PYTHONPATH_SCIPY">$INSTALL_DIR</environment_variable>
36 <environment_variable action="set_to" name="PATH_SCIPY">$INSTALL_DIR/bin</environment_variable>
37 <environment_variable action="set_to" name="SCIPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
38 </action>
39 </actions>
40 </install>
41 <readme>Compiling scipy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for scipy can be accessed through PYTHONPATH_SCIPY and the binaries with PATH_SCIPY.</readme>
42 </package>
43 </tool_dependency>