Mercurial > repos > iuc > package_python_2_7_scipy_0_14

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
author iuc
date Sun, 17 May 2015 14:48:31 -0400
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children 54bbb52864b6
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-1:000000000000 0:8d22fd5a704c
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="atlas" version="3.10.2">
4 <repository changeset_revision="d5b1c7875b7b" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="numpy" version="1.9">
7 <repository changeset_revision="a095a5975d3a" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="python" version="2.7">
10 <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="scipy" version="0.14">
13 <install version="1.0">
14 <actions>
15 <action type="set_environment_for_install">
16 <repository changeset_revision="d5b1c7875b7b" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
17 <package name="atlas" version="3.10.2" />
18 </repository>
19 <repository changeset_revision="a095a5975d3a" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
20 <package name="numpy" version="1.9" />
21 </repository>
22 </action>
23 <action type="setup_python_environment">
24 <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
25 <package name="python" version="2.7" />
26 </repository>
27 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
28 <package>https://pypi.python.org/packages/source/s/scipy/scipy-0.14.0.tar.gz</package>
29 </action>
30 <action type="set_environment">
31 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
32 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
33 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
34 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
35 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
36 <environment_variable action="set_to" name="PYTHONPATH_SCIPY">$INSTALL_DIR/lib/python</environment_variable>
37 <environment_variable action="set_to" name="PATH_SCIPY">$INSTALL_DIR/bin</environment_variable>
38 <environment_variable action="set_to" name="SCIPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
39 </action>
40 </actions>
41 </install>
42 <readme>Compiling scipy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for scipy can be accessed through PYTHONPATH_SCIPY and the binaries with PATH_SCIPY.</readme>
43 </package>
44 </tool_dependency>