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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
author iuc
date Sun, 17 May 2015 14:53:39 -0400
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children 134585210cb5
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-1:000000000000 0:088ad9f80c9d
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="python" version="2.7">
4 <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="numpy" version="1.9">
7 <repository changeset_revision="a095a5975d3a" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="scipy" version="0.14">
10 <repository changeset_revision="8d22fd5a704c" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="matplotlib" version="1.4">
13 <repository changeset_revision="652ee3afbd12" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="scikit_learn" version="0.15">
16 <install version="1.0">
17 <actions>
18 <action type="set_environment_for_install">
19 <repository changeset_revision="a095a5975d3a" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
20 <package name="numpy" version="1.9" />
21 </repository>
22 <repository changeset_revision="8d22fd5a704c" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
23 <package name="scipy" version="0.14" />
24 </repository>
25 <repository changeset_revision="652ee3afbd12" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
26 <package name="matplotlib" version="1.4" />
27 </repository>
28 </action>
29
30 <action type="setup_python_environment">
31 <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
32 <package name="python" version="2.7" />
33 </repository>
34
35 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
36 <package>https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz#md5=d9822ad0238e17b382a3c756ea94fe0d</package>
37 </action>
38
39 <action type="set_environment">
40 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
41 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
42 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
43 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
44 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
45 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable>
46 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable>
47 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable>
48 </action>
49 </actions>
50 </install>
51 <readme>
52 Compiling scikit-learn requires a C compiler (typically gcc).
53 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.
54
55 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies
56 </readme>
57 </package>
58 </tool_dependency>