Mercurial > repos > iuc > package_python_2_7_qime_1_9_1

diff tool_dependencies.xml @ 0:46d4a44f8243 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_qime_1_9_1 commit f75ecd5f25f3754feeffacba92501c110737071b
author iuc
date Mon, 05 Oct 2015 17:08:36 -0400
parents
children 8bda264029a7
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Oct 05 17:08:36 2015 -0400
@@ -0,0 +1,37 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="8d42102c4e36" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="python" version="2.7.10">
+        <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="qime" version="1.9.1">
+        <install version="1.0">
+            <actions>
+                <action type="setup_python_environment">
+                   <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                       <package name="python" version="2.7.10" />
+                   </repository>
+                    <repository changeset_revision="8d42102c4e36" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.9" />
+                    </repository>
+                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
+                    <package md5sum="32d4db2b2c888dbbfc6aa33f02725526">https://pypi.python.org/packages/source/q/qiime/qiime-1.9.1.tar.gz</package>
+                </action>
+
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
+                    <environment_variable action="set_to" name="PYTHONPATH_QIME">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="set_to" name="QIME_ROOT_PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            QIIME: Quantitative Insights Into Microbial Ecology
+            http://www.qiime.org
+        </readme>
+    </package>
+</tool_dependency>