Mercurial > repos > iuc > package_python_2_7_qiime_1_9_1

comparison tool_dependencies.xml @ 12:0c77f58be4fb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_qiime_1_9_1 commit 97a064489364118d108b0dd2cfb4d9bc53080837
author iuc
date Thu, 19 Nov 2015 14:06:22 -0500
parents fc652967472e
children 0b34b09c9fef
comparison
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11:fc652967472e 12:0c77f58be4fb
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="numpy" version="1.9"> 3 <package name="numpy" version="1.9">
4 <repository changeset_revision="c557e8b3a320" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="db045339112b" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="python" version="2.7.10"> 6 <package name="python" version="2.7.10">
7 <repository changeset_revision="e372b77da7be" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="2f32acbaf21a" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="pandas" version="0.16"> 9 <package name="pandas" version="0.16">
10 <repository changeset_revision="8efb7d3a3f38" name="package_python_2_7_pandas_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="5f98b3d00de4" name="package_python_2_7_pandas_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="matplotlib" version="1.4"> 12 <package name="matplotlib" version="1.4">
13 <repository changeset_revision="7e97b496667d" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="f05de70312d0" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <package name="scipy" version="0.14"> 15 <package name="scipy" version="0.14">
16 <repository changeset_revision="10a6799b6a27" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="68c8bff2b07b" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package> 17 </package>
18 <package name="requests" version="2.7"> 18 <package name="requests" version="2.7">
19 <repository changeset_revision="3f30b1f60e42" name="package_python_2_7_requests_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 19 <repository changeset_revision="c6a6626ca04c" name="package_python_2_7_requests_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
20 </package> 20 </package>
21 <package name="qiime" version="1.9.1"> 21 <package name="qiime" version="1.9.1">
22 <install version="1.0"> 22 <install version="1.0">
23 <actions> 23 <actions>
24 <action type="setup_python_environment"> 24 <action type="setup_python_environment">
25 <repository changeset_revision="c557e8b3a320" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 25 <repository changeset_revision="db045339112b" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
26 <package name="numpy" version="1.9" /> 26 <package name="numpy" version="1.9" />
27 </repository> 27 </repository>
28 <repository changeset_revision="8efb7d3a3f38" name="package_python_2_7_pandas_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 28 <repository changeset_revision="5f98b3d00de4" name="package_python_2_7_pandas_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
29 <package name="pandas" version="0.16" /> 29 <package name="pandas" version="0.16" />
30 </repository> 30 </repository>
31 <repository changeset_revision="7e97b496667d" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 31 <repository changeset_revision="f05de70312d0" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
32 <package name="matplotlib" version="1.4" /> 32 <package name="matplotlib" version="1.4" />
33 </repository> 33 </repository>
34 <repository changeset_revision="10a6799b6a27" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 34 <repository changeset_revision="68c8bff2b07b" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
35 <package name="scipy" version="0.14" /> 35 <package name="scipy" version="0.14" />
36 </repository> 36 </repository>
37 <repository changeset_revision="3f30b1f60e42" name="package_python_2_7_requests_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 37 <repository changeset_revision="c6a6626ca04c" name="package_python_2_7_requests_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
38 <package name="requests" version="2.7" /> 38 <package name="requests" version="2.7" />
39 </repository> 39 </repository>
40 <repository changeset_revision="e372b77da7be" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 40 <repository changeset_revision="2f32acbaf21a" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
41 <package name="python" version="2.7.10" /> 41 <package name="python" version="2.7.10" />
42 </repository> 42 </repository>
43 <!-- allow downloading and installing an Python package from https://pypi.org/ --> 43 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
44 44
45 <package md5sum="25337740507cb855ad58bfcf60f7710e">https://pypi.python.org/packages/source/p/pickleshare/pickleshare-0.5.tar.gz</package> 45 <package md5sum="25337740507cb855ad58bfcf60f7710e">https://pypi.python.org/packages/source/p/pickleshare/pickleshare-0.5.tar.gz</package>
83 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_PANDAS]</environment_variable> 83 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_PANDAS]</environment_variable>
84 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> 84 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
85 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_REQUESTS]</environment_variable> 85 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_REQUESTS]</environment_variable>
86 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> 86 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
87 <environment_variable action="set_to" name="PYTHONPATH_QIME">$INSTALL_DIR</environment_variable> 87 <environment_variable action="set_to" name="PYTHONPATH_QIME">$INSTALL_DIR</environment_variable>
88 <environment_variable action="set_to" name="QIME_ROOT_PATH">$INSTALL_DIR</environment_variable> 88 <environment_variable action="set_to" name="QIIME_ROOT_PATH">$INSTALL_DIR</environment_variable>
89 </action> 89 </action>
90 </actions> 90 </actions>
91 </install> 91 </install>
92 <readme> 92 <readme>
93 QIIME: Quantitative Insights Into Microbial Ecology 93 QIIME: Quantitative Insights Into Microbial Ecology