Mercurial > repos > iuc > package_python_2_7_pysam_0_8_3

comparison tool_dependencies.xml @ 1:822a4874521b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 47e07ae5df96d13de8422296cc4334bec10368b5-dirty
author iuc
date Sun, 17 May 2015 18:36:14 -0400
parents d2acc22011f9
children cd6f0847002b
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0:d2acc22011f9 1:822a4874521b
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="python" version="2.7"> 3 <package name="python" version="2.7">
4 <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="55bebb0e06ec" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="pysam" version="0.8.3"> 6 <package name="pysam" version="0.8.3">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="setup_python_environment"> 9 <action type="setup_python_environment">
10 <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 10 <repository changeset_revision="55bebb0e06ec" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
11 <package name="python" version="2.7" /> 11 <package name="python" version="2.7" />
12 </repository> 12 </repository>
13 <!-- allow downloading and installing an Python package from https://pypi.org/ --> 13 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
14 <package>https://pypi.python.org/packages/source/p/pysam/pysam-0.8.3.tar.gz</package> 14 <package>https://pypi.python.org/packages/source/p/pysam/pysam-0.8.3.tar.gz</package>
15 </action> 15 </action>
16
17 <action type="set_environment"> 16 <action type="set_environment">
18 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> 17 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
19 <environment_variable action="set_to" name="PYTHONPATH_PYSAM">$INSTALL_DIR/lib/python</environment_variable> 18 <environment_variable action="set_to" name="PYTHONPATH_PYSAM">$INSTALL_DIR</environment_variable>
20 <environment_variable action="set_to" name="PATH_PYSAM">$INSTALL_DIR/bin</environment_variable> 19 <environment_variable action="set_to" name="PATH_PYSAM">$INSTALL_DIR/bin</environment_variable>
21 <environment_variable action="set_to" name="PYSAM_ROOT_DIR">$INSTALL_DIR</environment_variable> 20 <environment_variable action="set_to" name="PYSAM_ROOT_DIR">$INSTALL_DIR</environment_variable>
22 </action> 21 </action>
23 </actions> 22 </actions>
24 </install> 23 </install>