Mercurial > repos > iuc > package_python_2_7_msproteomicstools_0_3_2

comparison tool_dependencies.xml @ 2:e7dfa3309ed3 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_msproteomicstools_0_3_2 commit ceaef1a06c8600f9a042fc8f80f5b3fae75d4445-dirty
author galaxyp
date Sat, 30 May 2015 05:29:41 -0400
parents 4381e493affd
children
comparison
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1:4381e493affd 2:e7dfa3309ed3
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="numpy" version="1.9"> 3 <package name="numpy" version="1.9">
4 <repository changeset_revision="1b7d6172a358" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="75990fbcd389" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="scipy" version="0.14"> 6 <package name="scipy" version="0.14">
7 <repository changeset_revision="b24af010d80a" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="eaf37c2ff694" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="libxslt" version="1.1.28"> 9 <package name="libxslt" version="1.1.28">
10 <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="python" version="2.7"> 12 <package name="python" version="2.7">
13 <repository changeset_revision="55bebb0e06ec" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="92611fea803c" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <package name="libxml2" version="2.9.1"> 15 <package name="libxml2" version="2.9.1">
16 <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package> 17 </package>
18 <package name="msproteomicstools" version="0.3.2"> 18 <package name="msproteomicstools" version="0.3.2">
19 <install version="1.0"> 19 <install version="1.0">
20 <actions> 20 <actions>
21 <action type="setup_python_environment"> 21 <action type="setup_python_environment">
22 <repository changeset_revision="55bebb0e06ec" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 22 <repository changeset_revision="92611fea803c" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
23 <package name="python" version="2.7" /> 23 <package name="python" version="2.7" />
24 </repository> 24 </repository>
25 <repository changeset_revision="1b7d6172a358" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 25 <repository changeset_revision="75990fbcd389" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
26 <package name="numpy" version="1.9" /> 26 <package name="numpy" version="1.9" />
27 </repository> 27 </repository>
28 <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu"> 28 <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
29 <package name="libxml2" version="2.9.1" /> 29 <package name="libxml2" version="2.9.1" />
30 </repository> 30 </repository>
31 <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu"> 31 <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
32 <package name="libxslt" version="1.1.28" /> 32 <package name="libxslt" version="1.1.28" />
33 </repository> 33 </repository>
34 <repository changeset_revision="b24af010d80a" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 34 <repository changeset_revision="eaf37c2ff694" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
35 <package name="scipy" version="0.14" /> 35 <package name="scipy" version="0.14" />
36 </repository> 36 </repository>
37 <!-- allow downloading and installing an Python package from https://pypi.org/ --> 37 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
38 <package>https://pypi.python.org/packages/source/l/lxml/lxml-3.4.1.tar.gz</package> 38 <package>https://pypi.python.org/packages/source/l/lxml/lxml-3.4.1.tar.gz</package>
39 <package>https://pypi.python.org/packages/source/x/xlwt/xlwt-0.7.5.tar.gz</package> 39 <package>https://pypi.python.org/packages/source/x/xlwt/xlwt-0.7.5.tar.gz</package>
40 <package>https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.7.3.tar.gz#md5=090a2d2b0c3c654ba44954be29306371</package> 40 <package>https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.7.3.tar.gz#md5=090a2d2b0c3c654ba44954be29306371</package>
41 <package>https://pypi.python.org/packages/source/s/scikits.datasmooth/scikits.datasmooth-0.61.tar.gz</package> 41 <package>https://pypi.python.org/packages/source/s/scikits.datasmooth/scikits.datasmooth-0.61.tar.gz</package>
42 <package>https://pypi.python.org/packages/source/p/pyteomics/pyteomics-2.5.5.tar.gz</package> 42 <package>https://pypi.python.org/packages/source/p/pyteomics/pyteomics-2.5.5.tar.gz</package>
43 <package>https://pypi.python.org/packages/source/c/cluster/cluster-1.2.2.tar.gz</package> 43 <package>https://pypi.python.org/packages/source/c/cluster/cluster-1.1.2.tar.gz</package>
44 <package>https://pypi.python.org/packages/source/c/cvxopt/cvxopt-1.1.7.tar.gz#md5=5b80f5382bb638e606e486ee39bc93b4</package>
45 <package>https://pypi.python.org/packages/source/c/configobj/configobj-4.7.2.tar.gz</package>
44 <package>https://pypi.python.org/packages/source/m/msproteomicstools/msproteomicstools-0.3.2.tar.gz</package> 46 <package>https://pypi.python.org/packages/source/m/msproteomicstools/msproteomicstools-0.3.2.tar.gz</package>
45 </action> 47 </action>
46 <action type="set_environment"> 48 <action type="set_environment">
47 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> 49 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
48 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> 50 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
49 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_PANDAS]</environment_variable> 51 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_PANDAS]</environment_variable>
50 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> 52 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
53 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
54 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/atlas</environment_variable>
51 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> 55 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
52 <environment_variable action="set_to" name="MSPROTEOMICSTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable> 56 <environment_variable action="set_to" name="MSPROTEOMICSTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
53 </action> 57 </action>
54 </actions> 58 </actions>
55 </install> 59 </install>