Mercurial > repos > iuc > package_python_2_7_deeptools_2_5_0

view tool_dependencies.xml @ 0:bd5783d34dde draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_5_0 commit 7efdf3224552d113a01043ee5bf4517d770df933
author iuc
date Fri, 31 Mar 2017 15:09:18 -0400
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="numpy" version="1.9">
        <repository changeset_revision="5f2b261ffc5b" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="pybigwig" version="0.2.8">
        <repository changeset_revision="a75cebd721fd" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="py2bit" version="0.2.0">
        <repository changeset_revision="f2b045ea1eb9" name="package_python_2_7_py2bit_0_2_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="matplotlib" version="1.4">
        <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="scipy" version="0.14">
        <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="pysam" version="0.8.3">
        <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="python" version="2.7.10">
        <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="deeptools" version="2.5.0">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                    <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="python" version="2.7.10" />
                    </repository>
                    <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="pysam" version="0.8.3" />
                    </repository>
                    <repository changeset_revision="5f2b261ffc5b" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="numpy" version="1.9" />
                    </repository>
                    <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="matplotlib" version="1.4" />
                    </repository>
                    <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="scipy" version="0.14" />
                    </repository>
                    <repository changeset_revision="a75cebd721fd" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="pybigwig" version="0.2.8" />
                    </repository>
                    <repository changeset_revision="f2b045ea1eb9" name="package_python_2_7_py2bit_0_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="py2bit" version="0.2.0" />
                    </repository>
                    <package sha256sum="71f519f505ca8c1efbed151f4e2a0ffbaa2a26667a6d212c895a6f1362dc5640">https://pypi.python.org/packages/82/19/eba98af7143960cc020732c1c91f4cca4916f56e0898bb32fb9b6eb52575/deepTools-2.5.0.tar.gz</package>
                </action>

                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable>
                    <!-- libpng lib path -->
                    <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
                    <!-- disable the config file of deepTools -->
                    <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
                </action>
             </actions>
         </install>
         <readme>
            Installation of deepTools from Fidel Ramirez.
            https://github.com/fidelram/deepTools
         </readme>
     </package>
</tool_dependency>