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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
author iuc
date Fri, 12 Aug 2016 05:07:56 -0400
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-1:000000000000 0:b24e063c73ea
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="numpy" version="1.9">
4 <repository changeset_revision="5f2b261ffc5b" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="pybigwig" version="0.2.8">
7 <repository changeset_revision="a75cebd721fd" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="matplotlib" version="1.4">
10 <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="scipy" version="0.14">
13 <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="pysam" version="0.8.3">
16 <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="python" version="2.7.10">
19 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
20 </package>
21 <package name="deepTools" version="2.3.3">
22 <install version="1.0">
23 <actions>
24 <action type="setup_python_environment">
25 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
26 <package name="python" version="2.7.10" />
27 </repository>
28 <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
29 <package name="pysam" version="0.8.3" />
30 </repository>
31 <repository changeset_revision="5f2b261ffc5b" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
32 <package name="numpy" version="1.9" />
33 </repository>
34 <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
35 <package name="matplotlib" version="1.4" />
36 </repository>
37 <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
38 <package name="scipy" version="0.14" />
39 </repository>
40 <repository changeset_revision="a75cebd721fd" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
41 <package name="pybigwig" version="0.2.8" />
42 </repository>
43 <package sha256sum="047511c9a6231207fa6ee49f901f9afa0f81c57e4bc03840392e48ed67d97203">https://pypi.python.org/packages/c1/03/982c3656e85e6f264b37d5f6e594d030d6dd99064913eb423d2b40fcebe3/deepTools-2.3.3.tar.gz</package>
44 </action>
45
46 <action type="set_environment">
47 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
48 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
49 <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable>
50 <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable>
51 <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable>
52 <!-- libpng lib path -->
53 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
54 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
55 <!-- disable the config file of deepTools -->
56 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
57 </action>
58 </actions>
59 </install>
60 <readme>
61 Installation of deepTools from Fidel Ramirez.
62 https://github.com/fidelram/deepTools
63 </readme>
64 </package>
65 </tool_dependency>