Mercurial > repos > iuc > package_python_2_7_deeptools_1_5_10

comparison tool_dependencies.xml @ 18:dac72a71462e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_10 commit 45a64d82dfada34d826be98a1f7a0657f9148d59-dirty
author galaxyp
date Sun, 31 May 2015 11:36:32 -0400
parents c4cdf0686bce
children 74c7e13473ed
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17:c4cdf0686bce 18:dac72a71462e
5 </package> 5 </package>
6 <package name="numpy" version="1.9"> 6 <package name="numpy" version="1.9">
7 <repository changeset_revision="a03fa85cc061" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="a03fa85cc061" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="matplotlib" version="1.4"> 9 <package name="matplotlib" version="1.4">
10 <repository changeset_revision="3a07ffbaf2de" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="c07ced95bfa7" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="scipy" version="0.14"> 12 <package name="scipy" version="0.14">
13 <repository changeset_revision="1facaa2c84dc" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="1facaa2c84dc" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <package name="pysam" version="0.8.3"> 15 <package name="pysam" version="0.8.3">
20 </package> 20 </package>
21 <package name="ucsc_tools" version="0.1"> 21 <package name="ucsc_tools" version="0.1">
22 <repository changeset_revision="7b7e399cb7e1" name="package_ucsc_tools_0_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 22 <repository changeset_revision="7b7e399cb7e1" name="package_ucsc_tools_0_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
23 </package> 23 </package>
24 <package name="python" version="2.7"> 24 <package name="python" version="2.7">
25 <repository changeset_revision="fb14ceede7bc" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 25 <repository changeset_revision="2933abfd8081" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
26 </package> 26 </package>
27 <package name="deepTools" version="1.5.10"> 27 <package name="deepTools" version="1.5.10">
28 <install version="1.0"> 28 <install version="1.0">
29 <actions> 29 <actions>
30 <action type="setup_python_environment"> 30 <action type="setup_python_environment">
31 <repository changeset_revision="fb14ceede7bc" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 31 <repository changeset_revision="2933abfd8081" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
32 <package name="python" version="2.7" /> 32 <package name="python" version="2.7" />
33 </repository> 33 </repository>
34 <repository changeset_revision="f987600fc67b" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 34 <repository changeset_revision="f987600fc67b" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
35 <package name="pysam" version="0.8.3" /> 35 <package name="pysam" version="0.8.3" />
36 </repository> 36 </repository>
37 <repository changeset_revision="849759ac468d" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 37 <repository changeset_revision="849759ac468d" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
38 <package name="bx-python" version="0.7.2" /> 38 <package name="bx-python" version="0.7.2" />
39 </repository> 39 </repository>
40 <repository changeset_revision="a03fa85cc061" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 40 <repository changeset_revision="a03fa85cc061" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
41 <package name="numpy" version="1.9" /> 41 <package name="numpy" version="1.9" />
42 </repository> 42 </repository>
43 <repository changeset_revision="3a07ffbaf2de" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 43 <repository changeset_revision="c07ced95bfa7" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
44 <package name="matplotlib" version="1.4" /> 44 <package name="matplotlib" version="1.4" />
45 </repository> 45 </repository>
46 <repository changeset_revision="1facaa2c84dc" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 46 <repository changeset_revision="1facaa2c84dc" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
47 <package name="scipy" version="0.14" /> 47 <package name="scipy" version="0.14" />
48 </repository> 48 </repository>
77 <!-- include pysam --> 77 <!-- include pysam -->
78 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_PYSAM]</environment_variable> 78 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_PYSAM]</environment_variable>
79 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_PYSAM]</environment_variable> 79 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_PYSAM]</environment_variable>
80 <!-- include ucsc tools --> 80 <!-- include ucsc tools -->
81 <environment_variable action="prepend_to" name="PATH">$ENV[UCSC_TOOLS_ROOT_PATH]</environment_variable> 81 <environment_variable action="prepend_to" name="PATH">$ENV[UCSC_TOOLS_ROOT_PATH]</environment_variable>
82 UCSC_TOOLS_ROOT_PATH
83 82
84 <!-- disable the config file of deepTools --> 83 <!-- disable the config file of deepTools -->
85 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable> 84 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
86 </action> 85 </action>
87 </actions> 86 </actions>