Mercurial > repos > iuc > package_python_2_7_deeptools_1_5_10

comparison tool_dependencies.xml @ 21:868baa52a164 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_10 commit 48fbe322d0f3ec023186989104ae4f4188b03a1d
author iuc
date Mon, 01 Jun 2015 22:47:42 -0400
parents 5eeb01defac2
children ecdd79c4835b
comparison
equal deleted inserted replaced
20:5eeb01defac2 21:868baa52a164
2 <tool_dependency> 2 <tool_dependency>
3 <package name="samtools" version="0.1.19"> 3 <package name="samtools" version="0.1.19">
4 <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="numpy" version="1.9"> 6 <package name="numpy" version="1.9">
7 <repository changeset_revision="30adb187cebe" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="ccb720c9e1ec" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="matplotlib" version="1.4"> 9 <package name="matplotlib" version="1.4">
10 <repository changeset_revision="d74a8855096a" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="47f5c8a0954f" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="scipy" version="0.14"> 12 <package name="scipy" version="0.14">
13 <repository changeset_revision="b5e320391a94" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="859942a3af31" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <package name="pysam" version="0.8.3"> 15 <package name="pysam" version="0.8.3">
16 <repository changeset_revision="0914a4cad53b" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="687ef6979f85" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package> 17 </package>
18 <package name="bx-python" version="0.7.2"> 18 <package name="bx-python" version="0.7.2">
19 <repository changeset_revision="bec8ae337cde" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 19 <repository changeset_revision="750a27f9f3e3" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
20 </package> 20 </package>
21 <package name="ucsc_tools" version="0.1"> 21 <package name="ucsc_tools" version="0.1">
22 <repository changeset_revision="7b7e399cb7e1" name="package_ucsc_tools_0_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 22 <repository changeset_revision="7b7e399cb7e1" name="package_ucsc_tools_0_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
23 </package> 23 </package>
24 <package name="python" version="2.7"> 24 <package name="python" version="2.7">
25 <repository changeset_revision="e17159d91086" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 25 <repository changeset_revision="22e17a8b5b82" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
26 </package> 26 </package>
27 <package name="deepTools" version="1.5.10"> 27 <package name="deepTools" version="1.5.10">
28 <install version="1.0"> 28 <install version="1.0">
29 <actions> 29 <actions>
30 <action type="setup_python_environment"> 30 <action type="setup_python_environment">
31 <repository changeset_revision="e17159d91086" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 31 <repository changeset_revision="22e17a8b5b82" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
32 <package name="python" version="2.7" /> 32 <package name="python" version="2.7" />
33 </repository> 33 </repository>
34 <repository changeset_revision="0914a4cad53b" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 34 <repository changeset_revision="687ef6979f85" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
35 <package name="pysam" version="0.8.3" /> 35 <package name="pysam" version="0.8.3" />
36 </repository> 36 </repository>
37 <repository changeset_revision="bec8ae337cde" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 37 <repository changeset_revision="750a27f9f3e3" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
38 <package name="bx-python" version="0.7.2" /> 38 <package name="bx-python" version="0.7.2" />
39 </repository> 39 </repository>
40 <repository changeset_revision="30adb187cebe" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 40 <repository changeset_revision="ccb720c9e1ec" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
41 <package name="numpy" version="1.9" /> 41 <package name="numpy" version="1.9" />
42 </repository> 42 </repository>
43 <repository changeset_revision="d74a8855096a" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 43 <repository changeset_revision="47f5c8a0954f" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
44 <package name="matplotlib" version="1.4" /> 44 <package name="matplotlib" version="1.4" />
45 </repository> 45 </repository>
46 <repository changeset_revision="b5e320391a94" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 46 <repository changeset_revision="859942a3af31" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
47 <package name="scipy" version="0.14" /> 47 <package name="scipy" version="0.14" />
48 </repository> 48 </repository>
49 <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu"> 49 <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
50 <package name="samtools" version="0.1.19" /> 50 <package name="samtools" version="0.1.19" />
51 </repository> 51 </repository>
77 <!-- include pysam --> 77 <!-- include pysam -->
78 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_PYSAM]</environment_variable> 78 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_PYSAM]</environment_variable>
79 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_PYSAM]</environment_variable> 79 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_PYSAM]</environment_variable>
80 <!-- include ucsc tools --> 80 <!-- include ucsc tools -->
81 <environment_variable action="prepend_to" name="PATH">$ENV[UCSC_TOOLS_ROOT_PATH]</environment_variable> 81 <environment_variable action="prepend_to" name="PATH">$ENV[UCSC_TOOLS_ROOT_PATH]</environment_variable>
82 UCSC_TOOLS_ROOT_PATH
83
84 <!-- disable the config file of deepTools --> 82 <!-- disable the config file of deepTools -->
85 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable> 83 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
86 </action> 84 </action>
87 </actions> 85 </actions>
88 </install> 86 </install>