Mercurial > repos > iuc > package_python_2_7_bwameth_0_2_0

changeset 0:fd470f9ef129 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bwameth_0_2_0 commit e912b80a0a6a556922a73037843600bd9de687db
author iuc
date Wed, 14 Sep 2016 16:47:16 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 38 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Sep 14 16:47:16 2016 -0400
@@ -0,0 +1,38 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="python" version="2.7.10">
+        <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bwa" version="0.7.12">
+       <repository changeset_revision="67aa12c8d449" name="package_bwa_0_7_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="samtools" version="1.2">
+       <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="toolshed" version="0.4.6">
+       <repository changeset_revision="fbf045f6d12d" name="package_python_2_7_toolshed_0_4_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bwameth" version="0.2.0">
+        <install version="1.0">
+            <actions>
+                <action type="setup_python_environment">
+                    <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="python" version="2.7.10" />
+                    </repository>
+                    <repository changeset_revision="fbf045f6d12d" name="package_python_2_7_toolshed_0_4_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="toolshed" version="0.4.6" />
+                    </repository>
+                    <package md5sum="7d6e2ed375da0fc3d44de3477aa5c087">https://depot.galaxyproject.org/software/bwameth/bwameth_0.2.0_src_all.tar.gz</package>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+             </actions>
+         </install>
+         <readme>
+            Installation of toolshed from Brent Pedersen
+            https://github.com/brentp/toolshed
+         </readme>
+     </package>
+</tool_dependency>