Mercurial > repos > iuc > package_python_2_7

comparison tool_dependencies.xml @ 23:00d2c3e43807 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
author iuc
date Thu, 21 May 2015 22:44:49 -0400
parents 25b20b323706
children b32fe7b978c7
comparison
equal deleted inserted replaced
22:25b20b323706 23:00d2c3e43807
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="zlib" version="1.2.8"> 3 <package name="zlib" version="1.2.8">
4 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6
7 <package name="readline" version="6.2"> 6 <package name="readline" version="6.2">
8 <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
9 </package> 8 </package>
10
11 <package name="bzlib" version="1.0.6"> 9 <package name="bzlib" version="1.0.6">
12 <repository changeset_revision="087298adb1fa" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="318cd7b46435" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
13 </package> 11 </package>
14
15 <package name="xz" version="5.0.5"> 12 <package name="xz" version="5.0.5">
16 <repository changeset_revision="6554cb54e83b" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="93412ba5fea5" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package> 14 </package>
18 15 <package name="openssl" version="1.0">
19 <package name="openssl" version="1.0.1"> 16 <repository changeset_revision="eeb069204cdc" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
20 <repository changeset_revision="2f87040d5ea9" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
21 </package> 17 </package>
22
23 <package name="sqlite" version="3.8.3"> 18 <package name="sqlite" version="3.8.3">
24 <repository changeset_revision="3ff7aae9ae47" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 19 <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
25 </package> 20 </package>
26
27 <package name="gdbm" version="1.11"> 21 <package name="gdbm" version="1.11">
28 <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 22 <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
29 </package> 23 </package>
30
31 <package name="ncurses" version="5.9"> 24 <package name="ncurses" version="5.9">
32 <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 25 <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
33 </package> 26 </package>
34
35 <package name="python" version="2.7"> 27 <package name="python" version="2.7">
36 <install version="1.0"> 28 <install version="1.0">
37 <actions> 29 <actions>
38 <action type="download_by_url">https://www.python.org/ftp/python/2.7.7/Python-2.7.7.tgz</action> 30 <action type="download_by_url">https://www.python.org/ftp/python/2.7.9/Python-2.7.9.tgz</action>
39 31
40 <action type="set_environment_for_install"> 32 <action type="set_environment_for_install">
41 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 33 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
42 <package name="zlib" version="1.2.8" /> 34 <package name="zlib" version="1.2.8" />
43 </repository> 35 </repository>
44 <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 36 <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
45 <package name="readline" version="6.2" /> 37 <package name="readline" version="6.2" />
46 </repository> 38 </repository>
47 <repository changeset_revision="087298adb1fa" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 39 <repository changeset_revision="318cd7b46435" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
48 <package name="bzlib" version="1.0.6" /> 40 <package name="bzlib" version="1.0.6" />
49 </repository> 41 </repository>
50 <repository changeset_revision="6554cb54e83b" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 42 <repository changeset_revision="93412ba5fea5" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
51 <package name="xz" version="5.0.5" /> 43 <package name="xz" version="5.0.5" />
52 </repository> 44 </repository>
53 <repository changeset_revision="2f87040d5ea9" name="package_openssl_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 45 <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
54 <package name="openssl" version="1.0.1" /> 46 <package name="sqlite" version="3.8.3" />
55 </repository> 47 </repository>
56 <repository changeset_revision="3ff7aae9ae47" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 48 <repository changeset_revision="eeb069204cdc" name="package_openssl_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
57 <package name="sqlite" version="3.8.3" /> 49 <package name="openssl" version="1.0" />
58 </repository> 50 </repository>
59 <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 51 <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
60 <package name="gdbm" version="1.11" /> 52 <package name="gdbm" version="1.11" />
61 </repository> 53 </repository>
62 <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 54 <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
63 <package name="ncurses" version="5.9" /> 55 <package name="ncurses" version="5.9" />
64 </repository> 56 </repository>
65 </action> 57 </action>
58 <!-- by default python is not looking af LD_INCLUDE_PATH and Co. -->
59 <action type="shell_command">sed -i -e "s/if host_platform == 'atheos':/if True:/g" setup.py</action>
66 60
67 <action type="autoconf" /> 61 <action type="autoconf" />
68
69 <action type="download_file">https://bitbucket.org/pypa/setuptools/get/5.2.tar.bz2</action> 62 <action type="download_file">https://bitbucket.org/pypa/setuptools/get/5.2.tar.bz2</action>
70 <action type="shell_command">tar -xjf 5.2.tar.bz2</action> 63 <action type="shell_command">tar -xjf 5.2.tar.bz2</action>
71 <action type="change_directory">pypa-setuptools-f493e6c4ffd8</action> 64 <action type="change_directory">pypa-setuptools-f493e6c4ffd8</action>
72 65
73 <action type="shell_command">export PATH=$PATH:$INSTALL_DIR/bin &amp;&amp; 66 <action type="shell_command">
67 export PATH=$PATH:$INSTALL_DIR/bin &amp;&amp;
74 export PYTHONHOME=$INSTALL_DIR &amp;&amp; 68 export PYTHONHOME=$INSTALL_DIR &amp;&amp;
75 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR &amp;&amp; 69 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR &amp;&amp;
76 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python2.7/site-packages/ &amp;&amp; 70 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python2.7/site-packages/ &amp;&amp;
77 export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:$INSTALL_DIR/lib/pkgconfig &amp;&amp; 71 export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:$INSTALL_DIR/lib/pkgconfig &amp;&amp;
78 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR</action> 72 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
73 </action>
79 <action type="set_environment"> 74 <action type="set_environment">
80 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 75 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
81 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> 76 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
82 <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable> 77 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
83 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable> 78 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
79 <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable>
80 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
84 </action> 81 </action>
85
86
87
88
89 </actions> 82 </actions>
90 </install> 83 </install>
91 84
92 <readme> 85 <readme>
93 The Python programming language version 2.7. 86 The Python programming language version 2.7.