Mercurial > repos > iuc > package_pybedtools_0_6_6

comparison tool_dependencies.xml @ 1:9084345ffde3 draft

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author iuc
date Wed, 18 Feb 2015 11:35:22 -0500
parents cc2ed79fc537
children a2f274dde479
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0:cc2ed79fc537 1:9084345ffde3
2 <tool_dependency> 2 <tool_dependency>
3 <package name="tabix" version="0.2.6"> 3 <package name="tabix" version="0.2.6">
4 <repository changeset_revision="c1743e071a28" name="package_tabix_0_2_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="c1743e071a28" name="package_tabix_0_2_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="samtools" version="0.1.19"> 6 <package name="samtools" version="0.1.19">
7 <repository changeset_revision="632f1a03db92" name="package_samtools_0_1_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="8b98841b6b2f" name="package_samtools_0_1_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="bedtools" version="2.19.1"> 9 <package name="bedtools" version="2.19.1">
10 <repository changeset_revision="3ad963111153" name="package_bedtools_2_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="3ad963111153" name="package_bedtools_2_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="cython" version="0.20.1"> 12 <package name="cython" version="0.20.1">
25 </repository> 25 </repository>
26 </action> 26 </action>
27 27
28 <action type="make_directory">$INSTALL_DIR/lib/python</action> 28 <action type="make_directory">$INSTALL_DIR/lib/python</action>
29 <action type="shell_command"> 29 <action type="shell_command">
30 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 30 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
31 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 31 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
32 </action> 32 </action>
33 33
34 <action type="set_environment"> 34 <action type="set_environment">
35 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 35 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>