Mercurial > repos > iuc > package_prokka_1_10

comparison tool_dependencies.xml @ 1:6e92dfd68f7e draft default tip

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author iuc
date Mon, 12 Jan 2015 08:05:16 -0500
parents ad3d1d8ca3cc
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0:ad3d1d8ca3cc 1:6e92dfd68f7e
8 </package> 8 </package>
9 <package name="prokka" version="1.10"> 9 <package name="prokka" version="1.10">
10 <install version="1.0"> 10 <install version="1.0">
11 <actions> 11 <actions>
12 <action type="download_by_url">http://www.vicbioinformatics.com/prokka-1.10.tar.gz</action> 12 <action type="download_by_url">http://www.vicbioinformatics.com/prokka-1.10.tar.gz</action>
13
14 <action type="set_environment_for_install">
15 <repository changeset_revision="2ba4c9419ceb" name="package_perl_xml_simple_2_20" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
16 <package name="perl_xml_simple" version="2.20" />
17 </repository>
18 <repository changeset_revision="bd1fcedd9aad" name="package_bioperl_1_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
19 <package name="bioperl" version="1.6.922" />
20 </repository>
21 </action>
22
13 <action type="shell_command">bin/prokka --setupdb</action> 23 <action type="shell_command">bin/prokka --setupdb</action>
14 <action type="move_directory_files"> 24 <action type="move_directory_files">
15 <source_directory>.</source_directory> 25 <source_directory>.</source_directory>
16 <destination_directory>$INSTALL_DIR</destination_directory> 26 <destination_directory>$INSTALL_DIR</destination_directory>
17 </action> 27 </action>