Mercurial > repos > iuc > package_progressivemauve_2_4_0

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
author iuc
date Fri, 09 Oct 2015 05:20:20 -0400
parents 2a5b50fd549f
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41a4f56f0764 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit 5c84ce50aff06cc7a1bad32557d9ca37bbc2afc0
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="progressivemauve" version="2.4.0">
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4 <install version="1.0">
3
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5 <actions_group>
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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6 <actions os="linux" architecture="x86_64">
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7 <action type="download_by_url">http://darlinglab.org/mauve/downloads/mauve_linux_2.4.0.tar.gz</action>
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8 <action type="move_file">
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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9 <source>linux-x64/progressiveMauve</source>
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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10 <destination>$INSTALL_DIR/bin</destination>
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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11 </action>
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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12 <action type="move_file">
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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13 <source>linux-x64/mauveAligner</source>
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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14 <destination>$INSTALL_DIR/bin</destination>
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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15 </action>
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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16 </actions>
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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18 <actions os="darwin" architecture="x86_64">
4
b1ba8f3bcdf1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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19 <action type="download_by_url">http://darlinglab.org/mauve/downloads/Mauve-2.4.0.dmg</action>
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20 <action type="shell_command">
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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21 hdiutil attach Mauve-2.4.0.dmg &amp;&amp;
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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22 mkdir -p $INSTALL_DIR/bin &amp;&amp;
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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23 cp /Volumes/Mauve-2.4.0/Mauve.app/Contents/MacOS/progressiveMauve $INSTALL_DIR/bin &amp;&amp;
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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24 cp /Volumes/Mauve-2.4.0/Mauve.app/Contents/MacOS/mauveAligner $INSTALL_DIR/bin &amp;&amp;
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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25 hdiutil detach /Volumes/Mauve-2.4.0
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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26 </action>
2a5b50fd549f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit e8e971905f5fce11a99d51b1399af45288389d76
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27 </actions>
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41a4f56f0764 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit 5c84ce50aff06cc7a1bad32557d9ca37bbc2afc0
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28 <action type="set_environment">
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29 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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30 </action>
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31 </actions_group>
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32 </install>
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33 <readme><![CDATA[
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34 Mauve is free of charge, open-source software licensed under the GNU GPL.
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35
41a4f56f0764 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit 5c84ce50aff06cc7a1bad32557d9ca37bbc2afc0
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36 Mauve is a system for constructing multiple genome alignments in the presence
41a4f56f0764 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit 5c84ce50aff06cc7a1bad32557d9ca37bbc2afc0
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37 of large-scale evolutionary events such as rearrangement and inversion.
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38 Multiple genome alignments provide a basis for research into comparative
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39 genomics and the study of genome-wide evolutionary dynamics.
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40
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41 http://darlinglab.org/mauve/
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42 ]]>
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43 </readme>
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44 </package>
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45 </tool_dependency>