annotate tool_dependencies.xml @ 0:e566c2da0d8c draft default tip

Uploaded
author iuc
date Mon, 16 Feb 2015 04:07:41 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
2 <tool_dependency>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
3 <package name="peptide_shaker" version="0.37">
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
4 <install version="1.0">
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
5 <actions>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
6 <action type="download_by_url">http://share.gruenings.eu/PeptideShaker-0.37.4-beta.zip</action>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
7 <action type="shell_command">chmod -R o+w resources</action>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
8 <action type="move_directory_files">
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
9 <source_directory>.</source_directory>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
10 <destination_directory>$INSTALL_DIR/</destination_directory>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
11 </action>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
12 <action type="set_environment">
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
14 <environment_variable name="PEPTIDESHAKER_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
15 <environment_variable name="PEPTIDESHAKER_JAR_PATH" action="set_to">$INSTALL_DIR/PeptideShaker-0.37.4-beta.jar</environment_variable>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
16 </action>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
17 </actions>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
18 </install>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
19 <readme>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
20 Install Galaxy package application for PeptideShaker 0.37.4.
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
21 http://peptide-shaker.googlecode.com
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
22 </readme>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
23 </package>
e566c2da0d8c Uploaded
iuc
parents:
diff changeset
24 </tool_dependency>