Mercurial > repos > iuc > package_openms_2_0

comparison tool_dependencies.xml @ 4:78a0d41b76fb draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_openms_2_0 commit 97a064489364118d108b0dd2cfb4d9bc53080837
author iuc
date Thu, 19 Nov 2015 13:49:12 -0500
parents 1a16c401c5a4
children
comparison
equal deleted inserted replaced
3:1a16c401c5a4 4:78a0d41b76fb
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <!-- ToDo can we get it easily without svn? Is this included in the final tarball? -->
3 <!-- svn checkout http://svn.code.sf.net/p/open-ms/code/THIRDPARTY/SEARCHENGINES/Linux/64bit/ _searchengines -->
4 <tool_dependency> 2 <tool_dependency>
5 <package name="openms" version="2.0"> 3 <package name="openms" version="2.0">
6 <install version="1.0"> 4 <install version="1.0">
7 <actions_group> 5 <actions_group>
8 <actions architecture="x86_64" os="linux"> 6 <actions architecture="x86_64" os="linux">
22 <actions architecture="x86_64" os="darwin"> 20 <actions architecture="x86_64" os="darwin">
23 <action type="download_by_url">https://github.com/OpenMS/OpenMS/archive/develop.tar.gz</action> 21 <action type="download_by_url">https://github.com/OpenMS/OpenMS/archive/develop.tar.gz</action>
24 <action type="download_by_url">https://github.com/OpenMS/contrib/archive/master.tar.gz</action> 22 <action type="download_by_url">https://github.com/OpenMS/contrib/archive/master.tar.gz</action>
25 <action type="shell_command">mv contrib-master ../contrib</action> 23 <action type="shell_command">mv contrib-master ../contrib</action>
26 <package name="libtool" version="2.4"> 24 <package name="libtool" version="2.4">
27 <repository name="package_libtool_2_4" owner="iuc" prior_installation_required="True" /> 25 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
28 </package> 26 </package>
29 <package name="Qt" version="4.8"> 27 <package name="Qt" version="4.8">
30 <repository name="package_qt_4_8" owner="iuc" prior_installation_required="True" /> 28 <repository changeset_revision="d05194d4dc93" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
31 </package> 29 </package>
32 <package name="zlib" version="1.2.8"> 30 <package name="zlib" version="1.2.8">
33 <repository name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" /> 31 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
34 </package> 32 </package>
35 <package name="bzlib" version="1.0.6"> 33 <package name="bzlib" version="1.0.6">
36 <repository name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" /> 34 <repository changeset_revision="29f79feefc77" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
37 </package> 35 </package>
38 <action type="set_environment_for_install"> 36 <action type="set_environment_for_install">
39 <repository name="package_libtool_2_4" owner="iuc"> 37 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
40 <package name="libtool" version="2.4" /> 38 <package name="libtool" version="2.4" />
41 </repository> 39 </repository>
42 <repository name="package_qt_4_8" owner="iuc"> 40 <repository changeset_revision="d05194d4dc93" name="package_qt_4_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
43 <package name="Qt" version="4.8" /> 41 <package name="Qt" version="4.8" />
44 </repository> 42 </repository>
45 <repository name="package_zlib_1_2_8" owner="iuc"> 43 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
46 <package name="zlib" version="1.2.8" /> 44 <package name="zlib" version="1.2.8" />
47 </repository> 45 </repository>
48 <repository name="package_bzlib_1_0" owner="iuc"> 46 <repository changeset_revision="29f79feefc77" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
49 <package name="bzlib" version="1.0.6" /> 47 <package name="bzlib" version="1.0.6" />
50 </repository> 48 </repository>
51 </action> 49 </action>
52 <action type="change_directory">../contrib</action> 50 <action type="change_directory">../contrib</action>
53 <action type="shell_command">cmake . -DBUILD_TYPE=SEQAN</action> 51 <action type="shell_command">cmake . -DBUILD_TYPE=SEQAN</action>
61 <action type="shell_command">cmake . -DBUILD_TYPE=EIGEN</action> 59 <action type="shell_command">cmake . -DBUILD_TYPE=EIGEN</action>
62 <action type="shell_command">cmake . -DBUILD_TYPE=WILDMAGIC</action> 60 <action type="shell_command">cmake . -DBUILD_TYPE=WILDMAGIC</action>
63 61
64 <action type="change_directory">..</action> 62 <action type="change_directory">..</action>
65 <action type="shell_command">cmake . -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DHAS_XSERVER=OFF -DENABLE_TUTORIALS=OFF -DENABLE_STYLE_TESTING=OFF -DENABLE_UNITYBUILD=OFF -DWITH_GUI=OFF</action> 63 <action type="shell_command">cmake . -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DHAS_XSERVER=OFF -DENABLE_TUTORIALS=OFF -DENABLE_STYLE_TESTING=OFF -DENABLE_UNITYBUILD=OFF -DWITH_GUI=OFF</action>
66 <action type="shell_command">make OpenMS TOPP UTILS</action> 64 <action type="make_install">OpenMS TOPP UTILS</action>
67 <action type="shell_command">make install</action>
68 <action type="set_environment"> 65 <action type="set_environment">
69 <environment_variable action="set_to" name="OPENMS_ROOT_PATH">$INSTALL_DIR</environment_variable> 66 <environment_variable action="set_to" name="OPENMS_ROOT_PATH">$INSTALL_DIR</environment_variable>
70 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 67 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
71 <environment_variable action="set_to" name="OPENMS_DATA_PATH">$INSTALL_DIR/share/OpenMS</environment_variable> 68 <environment_variable action="set_to" name="OPENMS_DATA_PATH">$INSTALL_DIR/share/OpenMS</environment_variable>
72 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable> 69 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
73 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[QT_ROOT_DIR]/lib/</environment_variable> 70 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[QT_ROOT_DIR]/lib/</environment_variable>
74 </action> 71 </action>
75 </actions> 72 </actions>
76 </actions_group> 73 </actions_group>
77 </install> 74 </install>
78 <readme> 75 <readme>