Mercurial > repos > iuc > package_numpy_1_7
annotate tool_dependencies.xml @ 8:5c489d2d630b draft default tip
Uploaded
| author | iuc |
|---|---|
| date | Wed, 15 Jul 2015 10:37:00 -0400 |
| parents | bbfe29f56566 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 4 | 3 <package name="atlas" version="3.10.2"> |
| 8 | 4 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 4 | 5 </package> |
| 0 | 6 <package name="numpy" version="1.7.1"> |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.7.1.tar.gz</action> | |
| 10 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 4 | 11 <action type="set_environment_for_install"> |
| 8 | 12 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 4 | 13 <package name="atlas" version="3.10.2" /> |
| 14 </repository> | |
| 15 </action> | |
| 8 | 16 <action type="shell_command"> |
| 17 cat > site.cfg <<EOF | |
| 18 [DEFAULT] | |
| 19 library_dirs = $ATLAS_LIB_DIR | |
| 20 include_dirs = $ATLAS_INCLUDE_DIR | |
| 21 [blas_opt] | |
| 22 libraries = blas, atlas | |
| 23 [lapack_opt] | |
| 24 libraries = lapack, atlas | |
| 25 EOF | |
| 26 </action> | |
| 3 | 27 <action type="shell_command"> |
| 28 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | |
| 4 | 29 export ATLAS=$ATLAS_ROOT_PATH && |
| 3 | 30 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin |
| 1 | 31 </action> |
| 0 | 32 <action type="set_environment"> |
| 4 | 33 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
| 0 | 34 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
| 5 | 35 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> |
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bbfe29f56566
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_7 commit 45a64d82dfada34d826be98a1f7a0657f9148d59
iuc
parents:
6
diff
changeset
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36 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/atlas</environment_variable> |
| 0 | 37 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable> |
| 38 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> | |
| 4 | 39 </action> |
| 0 | 40 </actions> |
| 41 </install> | |
| 42 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme> | |
| 43 </package> | |
| 44 </tool_dependency> |