Mercurial > repos > iuc > package_ncbi_vdb_2_6_2

diff tool_dependencies.xml @ 0:62f37b0b1373 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit b3cb19dca2651e57fccc84cc09c8ad2202502528
author iuc
date Tue, 17 May 2016 04:33:08 -0400
parents
children 1b2990f1663b
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue May 17 04:33:08 2016 -0400
@@ -0,0 +1,47 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="95dad0955d7e" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="libxml2" version="2.9.3">
+        <repository changeset_revision="0e56e92cb6fd" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="ngs_sdk" version="1.2.3">
+        <repository changeset_revision="af8bc70ca765" name="package_ngs_sdk_1_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="libmagic" version="5.25">
+        <repository changeset_revision="c7b9857a1522" name="package_libmagic_5_25" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="ncbi_vdb" version="2.6.2">
+        <install version="1.0">
+            <actions>
+                <action target_filename="ncbi-vdb-2.6.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.6.2.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="95dad0955d7e" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+                    <repository changeset_revision="0e56e92cb6fd" name="package_libxml2_2_9_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="libxml2" version="2.9.3" />
+                    </repository>
+                    <repository changeset_revision="af8bc70ca765" name="package_ngs_sdk_1_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="ngs_sdk" version="1.2.3" />
+                    </repository>
+                 <repository changeset_revision="c7b9857a1522" name="package_libmagic_5_25" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="libmagic" version="5.25" />
+                    </repository>
+                </action>
+                <action type="autoconf">--prefix=$INSTALL_DIR --with-ngs-sdk-prefix=$NGS_SDK_DIR --with-xml2-prefix=$LIBXML2_ROOT_DIR --build=$INSTALL_DIR</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR/</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="NCBI_VDB_DIR">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            ncbi-vdb, required for sra-tools package.
+        </readme>
+    </package>
+</tool_dependency>