Mercurial > repos > iuc > package_mummer_3_23
comparison tool_dependencies.xml @ 1:fa0ec960c47d draft default tip
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| author | iuc |
|---|---|
| date | Tue, 24 Feb 2015 22:40:49 -0500 |
| parents | 020178be49ee |
| children |
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| 0:020178be49ee | 1:fa0ec960c47d |
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| 16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | 16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
| 17 </action> | 17 </action> |
| 18 </actions> | 18 </actions> |
| 19 </install> | 19 </install> |
| 20 <readme> | 20 <readme> |
| 21 MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. | |
| 22 For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, | |
| 23 using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it can easily handle the 100s or 1000s | |
| 24 of contigs from a shotgun sequencing project, and will align them to another set of contigs or a genome using the NUCmer program included with the system. | |
| 25 If the species are too divergent for a DNA sequence alignment to detect similarity, then the PROmer program can generate | |
| 26 alignments based upon the six-frame translations of both input sequences. | |
| 27 | |
| 21 http://mummer.sourceforge.net/ | 28 http://mummer.sourceforge.net/ |
| 22 MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it can easily handle the 100s or 1000s of contigs from a shotgun sequencing project, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for a DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences. | |
| 23 </readme> | 29 </readme> |
| 24 </package> | 30 </package> |
| 25 </tool_dependency> | 31 </tool_dependency> |