Mercurial > repos > iuc > package_msgfplus_20140210

annotate tool_dependencies.xml @ 0:7d4a89b80c17 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iuc
date Mon, 06 Apr 2015 16:05:49 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
2 <tool_dependency>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
3 <package name="msgfplus" version="20140210">
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
4 <install version="1.0">
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
5 <actions>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
6 <action type="download_by_url">http://proteomics.ucsd.edu/Software/MSGFPlus/MSGFPlus.20140210.zip</action>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
7 <action type="move_file">
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
8 <source>MSGFPlus.jar</source>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
9 <destination>$INSTALL_DIR</destination>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
10 </action>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
11 <action type="set_environment">
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
12 <environment_variable name="MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
13 <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
15 </action>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
16 </actions>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
17 </install>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
18 <readme>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
19 Downloads and installs MSGF+.
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
20 https://proteomics.ucsd.edu/
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
21 Java 1.6 is required to run MSGF+.
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
22 </readme>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
23 </package>
7d4a89b80c17 Uploaded
iuc
parents:
diff changeset
24 </tool_dependency>