view tool_dependencies.xml @ 1:802f5b87ab91 draft

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author iuc
date Fri, 14 Nov 2014 05:11:27 -0500
parents 3d29ab6f1146
children 8bfbf6a78022
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<?xml version="1.0"?>
<tool_dependency>
    <package name="libxml2" version="2.9.1">
        <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="libxslt" version="1.1.28">
        <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="perl" version="5.18.1">
        <repository changeset_revision="a1a111b9faa5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="graphicsmagick" version="1.3.18">
        <repository changeset_revision="2fd4eb971ba5" name="package_graphicsmagick_1_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="ghostscript" version="9.07">
        <repository changeset_revision="6261034b0d94" name="package_ghostscript_9_07" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="meme" version="4.10.0">
        <install version="1.0">
            <actions>

                <action type="download_by_url">http://ebi.edu.au/ftp/software/MEME/4.10.0/meme_4.10.0_1.tar.gz</action>
                <action type="setup_perl_environment">
                    <repository changeset_revision="a1a111b9faa5" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="perl" version="5.18.1" />
                    </repository>
                   <!-- allow downloading and installing an Perl package from cpan.org-->
                   <package>http://search.cpan.org/CPAN/authors/id/P/PE/PETDANCE/HTML-Tagset-3.20.tar.gz</package>
                   <package>http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/HTML-Parser-3.71.tar.gz</package>
                   <package>http://search.cpan.org/CPAN/authors/id/W/WO/WONKO/HTML-Template-2.95.tar.gz</package>
                </action>

                <action type="set_environment_for_install">
                    <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="libxml2" version="2.9.1" />
                    </repository>
                    <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="libxslt" version="1.1.28" />
                    </repository>
                    <repository changeset_revision="2fd4eb971ba5" name="package_graphicsmagick_1_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="graphicsmagick" version="1.3.18" />
                    </repository>
                    <repository changeset_revision="6261034b0d94" name="package_ghostscript_9_07" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="ghostscript" version="9.07" />
                    </repository>
                </action>

                <action type="autoconf">--with-url=http://meme.nbcr.net/meme</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="set_to" name="MEME_ROOT_DIR">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Motif-based sequence analysis tools. http://meme.nbcr.net</readme>
    </package>
</tool_dependency>