Mercurial > repos > iuc > package_lapack_3_4

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit 4e829bc62e1328b12abf9d43112967296dcfed7a
author iuc
date Thu, 16 Jun 2016 12:15:43 -0400
parents b5caa0c1be7b
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c62da294b82e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="cmake" version="3.2.3">
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4 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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c62da294b82e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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5 </package>
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6 <package name="lapack" version="3.4.2">
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7 <install version="1.0">
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8 <actions>
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9 <action sha256sum="60a65daaf16ec315034675942618a2230521ea7adf85eea788ee54841072faf0" type="download_by_url">https://depot.galaxyproject.org/software/lapack/lapack_3.4.2_src_all.tar.gz</action>
ad6c1415507a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit 4e829bc62e1328b12abf9d43112967296dcfed7a
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c62da294b82e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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11 <action type="set_environment_for_install">
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b5caa0c1be7b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
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12 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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c62da294b82e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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13 <package name="cmake" version="3.2.3" />
c62da294b82e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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14 </repository>
c62da294b82e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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15 </action>
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ad6c1415507a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit 4e829bc62e1328b12abf9d43112967296dcfed7a
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17 <!-- compile both static and shared library -->
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18 <action type="shell_command">
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19 mkdir build &amp;&amp;
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20 cd build &amp;&amp;
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c62da294b82e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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21 cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/lapack -DCMAKE_Fortran_FLAGS='-O2 -fPIC' &amp;&amp;
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22 make &amp;&amp;
ad6c1415507a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit 4e829bc62e1328b12abf9d43112967296dcfed7a
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23 make install &amp;&amp;
ad6c1415507a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit 4e829bc62e1328b12abf9d43112967296dcfed7a
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24 cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/lapack -DBUILD_SHARED_LIBS=ON -DCMAKE_Fortran_FLAGS='-O2 -fPIC' &amp;&amp;
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c62da294b82e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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25 make &amp;&amp;
c62da294b82e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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26 make install
c62da294b82e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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27 </action>
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28 <action type="set_environment">
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c62da294b82e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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29 <environment_variable action="set_to" name="LAPACK_LIB_DIR">$INSTALL_DIR/lapack/lib</environment_variable>
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30 <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lapack/lib</environment_variable>
ad6c1415507a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit 4e829bc62e1328b12abf9d43112967296dcfed7a
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31 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lapack/lib</environment_variable>
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32 </action>
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33 </actions>
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34 </install>
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35 <readme>LAPACK requires gcc, gfortran and cmake. LAPACK_LIB_DIR will be set (including liblapack.a and libblas.a). </readme>
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36 </package>
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37 </tool_dependency>