Mercurial > repos > iuc > package_htseq_0_6

comparison tool_dependencies.xml @ 4:d264b3fa9876 draft

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author iuc
date Wed, 18 Feb 2015 11:34:51 -0500
parents 6f11912584b6
children 17ab9b2c5556
comparison
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3:6f11912584b6 4:d264b3fa9876
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="numpy" version="1.7.1"> 3 <package name="numpy" version="1.7.1">
4 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="6a7842f2f960" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="matplotlib" version="1.2.1"> 6 <package name="matplotlib" version="1.2.1">
7 <repository changeset_revision="85b7ddf90888" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="de9c362fb3f2" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="htseq" version="0.6.1"> 9 <package name="htseq" version="0.6.1">
10 <install version="1.0"> 10 <install version="1.0">
11 <actions> 11 <actions>
12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action> 12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action>
13 13
14 <action type="set_environment_for_install"> 14 <action type="set_environment_for_install">
15 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 15 <repository changeset_revision="6a7842f2f960" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
16 <package name="numpy" version="1.7.1" /> 16 <package name="numpy" version="1.7.1" />
17 </repository> 17 </repository>
18 <repository changeset_revision="85b7ddf90888" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 18 <repository changeset_revision="de9c362fb3f2" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
19 <package name="matplotlib" version="1.2.1" /> 19 <package name="matplotlib" version="1.2.1" />
20 </repository> 20 </repository>
21 </action> 21 </action>
22 22
23 <action type="make_directory">$INSTALL_DIR/lib/python</action> 23 <action type="make_directory">$INSTALL_DIR/lib/python</action>
24 <action type="shell_command"> 24 <action type="shell_command">
25 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 25 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
26 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> 26 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
27 <action type="set_environment"> 27 <action type="set_environment">
28 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 28 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
30 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> 30 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>