Mercurial > repos > iuc > package_graphclust_0_7_6

changeset 0:0881edd7f341 draft default tip

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author iuc
date Mon, 06 Apr 2015 17:11:32 -0400
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children
files tool_dependencies.xml
diffstat 1 files changed, 55 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Apr 06 17:11:32 2015 -0400
@@ -0,0 +1,55 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="blast_plus_2_2_26" version="2.2.6">
+        <repository changeset_revision="ebde5fa60194" name="package_blast_plus_2_2_26" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+
+    <package name="infernal_1_1rc4" version="1.1">
+        <repository changeset_revision="bdf8789c423c" name="package_infernal_1_1rc4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+
+    <package name="viennaRNA" version="1.8.5">
+        <action type="download_file">http://www.tbi.univie.ac.at/~ronny/RNA/packages/source/ViennaRNA-1.8.5.tar.gz</action>
+        <action type="shell_command">
+            mkdir $INSTALL_DIR/viennaRNA/ &amp;&amp;
+            ./configure --prefix=$INSTALL_DIR/viennaRNA/
+            make
+            make install
+        </action>
+    </package>
+
+    <package name="locarna" version="1.7.7.1">
+        <action type="download_file">http://www.bioinf.uni-freiburg.de/Software/LocARNA/Releases/locarna-1.7.7.1.tar.gz</action>
+        <action type="shell_command">
+            mkdir build &amp;&amp;
+            cd build &amp;&amp;
+            mkdir $INSTALL_DIR/locarna/ &amp;&amp;
+            ../configure --prefix=$INSTALL_DIR/locarna/ --with-vrna=$INSTALL_DIR/locarna/
+            make
+            make install
+        </action>
+    </package>
+
+    <package name="rnashapes" version="2.1.6">
+        <action type="download_file">http://bibiserv.techfak.uni-bielefeld.de/spool/download/bibiserv_1380821679_17785/RNAshapes-2.1.6.tar.gz</action>
+        <action type="shell_command">
+            mkdir build &amp;&amp;
+            cd build &amp;&amp;
+            mkdir $INSTALL_DIR/rnashapes/ &amp;&amp;
+            ../configure --prefix=$INSTALL_DIR/rnashapes/
+            make
+            make install
+        </action>
+    </package>
+
+    <package name="rnaz" version="2.1">
+        <action type="download_file">http://www.tbi.univie.ac.at/~wash/RNAz/RNAz-2.1.tar.gz</action>
+        <action type="shell_command">
+            mkdir $INSTALL_DIR/RNAz/ &amp;&amp;
+            ./configure --prefix=$INSTALL_DIR/RNAz/
+            make
+            make install
+        </action>
+    </package>
+
+</tool_dependency>