# HG changeset patch
# User iuc
# Date 1428354692 14400
# Node ID 0881edd7f341885a571f984bdb07b97d584d71f9

Uploaded

diff -r 000000000000 -r 0881edd7f341 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Apr 06 17:11:32 2015 -0400
@@ -0,0 +1,55 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="blast_plus_2_2_26" version="2.2.6">
+        <repository changeset_revision="ebde5fa60194" name="package_blast_plus_2_2_26" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+
+    <package name="infernal_1_1rc4" version="1.1">
+        <repository changeset_revision="bdf8789c423c" name="package_infernal_1_1rc4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+
+    <package name="viennaRNA" version="1.8.5">
+        <action type="download_file">http://www.tbi.univie.ac.at/~ronny/RNA/packages/source/ViennaRNA-1.8.5.tar.gz</action>
+        <action type="shell_command">
+            mkdir $INSTALL_DIR/viennaRNA/ &amp;&amp;
+            ./configure --prefix=$INSTALL_DIR/viennaRNA/
+            make
+            make install
+        </action>
+    </package>
+
+    <package name="locarna" version="1.7.7.1">
+        <action type="download_file">http://www.bioinf.uni-freiburg.de/Software/LocARNA/Releases/locarna-1.7.7.1.tar.gz</action>
+        <action type="shell_command">
+            mkdir build &amp;&amp;
+            cd build &amp;&amp;
+            mkdir $INSTALL_DIR/locarna/ &amp;&amp;
+            ../configure --prefix=$INSTALL_DIR/locarna/ --with-vrna=$INSTALL_DIR/locarna/
+            make
+            make install
+        </action>
+    </package>
+
+    <package name="rnashapes" version="2.1.6">
+        <action type="download_file">http://bibiserv.techfak.uni-bielefeld.de/spool/download/bibiserv_1380821679_17785/RNAshapes-2.1.6.tar.gz</action>
+        <action type="shell_command">
+            mkdir build &amp;&amp;
+            cd build &amp;&amp;
+            mkdir $INSTALL_DIR/rnashapes/ &amp;&amp;
+            ../configure --prefix=$INSTALL_DIR/rnashapes/
+            make
+            make install
+        </action>
+    </package>
+
+    <package name="rnaz" version="2.1">
+        <action type="download_file">http://www.tbi.univie.ac.at/~wash/RNAz/RNAz-2.1.tar.gz</action>
+        <action type="shell_command">
+            mkdir $INSTALL_DIR/RNAz/ &amp;&amp;
+            ./configure --prefix=$INSTALL_DIR/RNAz/
+            make
+            make install
+        </action>
+    </package>
+
+</tool_dependency>