Mercurial > repos > iuc > package_gmap_2016_09_23

comparison tool_dependencies.xml @ 1:cddc18d238f7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Use dots in package version to match BioConda
author iuc
date Tue, 25 Oct 2016 09:08:50 -0400
parents 78dcc4213e07
children 8e8be119bda7
comparison
equal deleted inserted replaced
0:78dcc4213e07 1:cddc18d238f7
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="gmap" version="2016-09-23"> 3 <package name="gmap" version="2016.09.23">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url" target_filename="gmap-2016-09-23.tar.gz" sha256sum="dbb99cab7ee675bdc79d6773d7537b197812e73151c5dafa1fbc8f9c0c58ef93">http://research-pub.gene.com/gmap/src/gmap-gsnap-2016-09-23.tar.gz</action> 6 <action type="download_by_url" target_filename="gmap-2016-09-23.tar.gz" sha256sum="dbb99cab7ee675bdc79d6773d7537b197812e73151c5dafa1fbc8f9c0c58ef93">http://research-pub.gene.com/gmap/src/gmap-gsnap-2016.09.23.tar.gz</action>
7 <action type="shell_command"> ./configure --prefix=$INSTALL_DIR --with-gmapdb=$INSTALL_DIR/gmapdb</action> 7 <action type="shell_command"> ./configure --prefix=$INSTALL_DIR --with-gmapdb=$INSTALL_DIR/gmapdb</action>
8 <action type="shell_command">make</action> 8 <action type="shell_command">make</action>
9 <action type="shell_command">make install</action> 9 <action type="shell_command">make install</action>
10 <action type="set_environment"> 10 <action type="set_environment">
11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>