diff tool_dependencies.xml @ 0:c457805d67c0 draft

Uploaded
author iuc
date Mon, 06 Apr 2015 17:58:46 -0400
parents
children 7e7a83e19348
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Apr 06 17:58:46 2015 -0400
@@ -0,0 +1,31 @@
+<tool_dependency>
+    <package name="gfClient" version="35x1">
+        <install version="1.0">
+            <actions>
+                <action type="download_binary">
+                    <url_template os="linux" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/linux/x86_64/gfClient_35x1</url_template>
+                    <url_template os="darwin" architecture="i686">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/gfClient_35x1</url_template>
+                    <url_template os="darwin" architecture="i386">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/gfClient_35x1</url_template>
+                    <url_template os="darwin" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/x86_64/gfClient_35x1</url_template>
+                </action>
+
+                <action type="move_file">
+                    <source>gfClient_35x1</source>
+                    <destination>$INSTALL_DIR/bin/gfClient</destination>
+                </action>
+                <action type="chmod">
+                    <file mode="755">$INSTALL_DIR/bin/gfClient</file>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="append_to">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable name="GFCLIENT_ROOT_PATH" action="append_to">$INSTALL_DIR</environment_variable>
+                </action>
+
+            </actions>
+        </install>
+        <readme>
+gfClient: a program that queries gfServer over the network, and then does a detailed alignment of the query sequence with regions found by gfServer.
+http://genome.ucsc.edu/goldenPath/help/blatSpec.html
+        </readme>
+    </package>
+</tool_dependency>