Mercurial > repos > iuc > package_genometools_1_5_7

comparison tool_dependencies.xml @ 1:921f8fbe4688 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
author iuc
date Tue, 26 Jan 2016 14:53:28 -0500
parents e89d0691dcda
children
comparison
equal deleted inserted replaced
0:e89d0691dcda 1:921f8fbe4688
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="cairo" version="1.14.2">
4 <repository changeset_revision="66ad0cc12007" name="package_cairo_1_14_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="genometools" version="1.5.7"> 3 <package name="genometools" version="1.5.7">
7 <install version="1.0"> 4 <install version="1.0">
8 <actions> 5 <actions>
9 <action sha256sum="b84a2eab9e7b8fb3e7acb5a1b9df40e8d07394d18357b4bb85c5a9004f3339e5" type="download_by_url">http://genometools.org/pub/genometools-1.5.7.tar.gz</action> 6 <action type="download_by_url" sha256sum="b84a2eab9e7b8fb3e7acb5a1b9df40e8d07394d18357b4bb85c5a9004f3339e5">
10 <action type="set_environment_for_install"> 7 https://depot.galaxyproject.org/software/genometools/genometools_1.5.7_src_all.tar.gz
11 <repository changeset_revision="8f011e7388e1" name="package_cairo_1_12_14" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
12 <package name="cairo" version="1.12.14" />
13 </repository>
14 </action> 8 </action>
15 <action type="make_install" /> 9 <action type="shell_command">make 64bit=yes cairo=no prefix=$INSTALL_DIR install</action>
16
17 <action type="make_directory">$INSTALL_DIR/lib/python</action> 10 <action type="make_directory">$INSTALL_DIR/lib/python</action>
18 <action type="shell_command">python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> 11 <action type="shell_command">cd gtpython &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
19 <action type="set_environment"> 12 <action type="set_environment">
20 <environment_variable action="set_to" name="GENOMETOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable> 13 <environment_variable action="set_to" name="GENOMETOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
21 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 14 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
22 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> 15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
24 </action> 17 </action>
25 </actions> 18 </actions>
26 </install> 19 </install>
27 <readme> 20 <readme>
28 The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. 21 The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt.
29 It is based on a C library named “libgenometools” which consists of several modules. 22 It is based on a C library named “libgenometools” which consists of several modules.
30 23
31 For more details, see: 24 For more details, see:
32 http://genometools.org/ 25 http://genometools.org/
33 </readme> 26 </readme>
34 </package> 27 </package>
35 </tool_dependency> 28 </tool_dependency>
29