Mercurial > repos > iuc > package_gemini_0_9_1

comparison tool_dependencies.xml @ 5:9383ac88d426 draft default tip

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author iuc
date Sun, 17 Aug 2014 11:42:31 -0400
parents a10ebb5a71bb
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4:a10ebb5a71bb 5:9383ac88d426
17 </package> 17 </package>
18 <package name="gemini" version="0.9.1"> 18 <package name="gemini" version="0.9.1">
19 <install version="1.0"> 19 <install version="1.0">
20 <actions> 20 <actions>
21 <!-- first action is always downloading --> 21 <!-- first action is always downloading -->
22 <action type="download_by_url">https://raw.github.com/bgruening/gemini-versioned-install/master/gemini_install_0.9.1.py</action> 22 <action type="download_file">https://raw.github.com/bgruening/gemini-versioned-install/master/gemini_install_0.9.1.py</action>
23 23
24 <!-- populate the environment variables from the dependend repos --> 24 <!-- populate the environment variables from the dependend repos -->
25 <action type="set_environment_for_install"> 25 <action type="set_environment_for_install">
26 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 26 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
27 <package name="zlib" version="1.2.8" /> 27 <package name="zlib" version="1.2.8" />
30 <package name="bedtools" version="2.19.1" /> 30 <package name="bedtools" version="2.19.1" />
31 </repository> 31 </repository>
32 </action> 32 </action>
33 33
34 <action type="shell_command"> 34 <action type="shell_command">
35 python gemini_install.py $INSTALL_DIR $INSTALL_DIR --nosudo --nodata --notools 35 python gemini_install_0.9.1.py $INSTALL_DIR $INSTALL_DIR --nosudo --nodata --notools
36 </action> 36 </action>
37 37
38 <action type="set_environment"> 38 <action type="set_environment">
39 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable> 39 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable>
40 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/gemini/bin</environment_variable> 40 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/gemini/bin</environment_variable>