Mercurial > repos > iuc > package_gemini_0_18_1

comparison tool_dependencies.xml @ 4:7c243453eac2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 08d911cd6eeeb0520348313cb29c9eff83c4c573
author iuc
date Thu, 18 Feb 2016 10:38:04 -0500
parents 13ce32ffda3a
children
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3:13ce32ffda3a 4:7c243453eac2
5 </package> 5 </package>
6 <package name="gemini" version="0.18.1"> 6 <package name="gemini" version="0.18.1">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <!-- first action is always downloading --> 9 <!-- first action is always downloading -->
10 <action sha256sum="1d3d3b9d47555e1f62c1a870d8fd2ecbfc0bed25910cab31af5b585db3144a68" type="download_file">https://github.com/arq5x/gemini/archive/v0.18.1.tar.gz</action> 10 <action sha256sum="1d3d3b9d47555e1f62c1a870d8fd2ecbfc0bed25910cab31af5b585db3144a68" type="download_by_url">https://github.com/arq5x/gemini/archive/v0.18.1.tar.gz</action>
11 11
12 <!-- populate the environment variables from the dependend repos --> 12 <!-- populate the environment variables from the dependend repos -->
13 <action type="set_environment_for_install"> 13 <action type="set_environment_for_install">
14 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 14 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
15 <package name="zlib" version="1.2.8" /> 15 <package name="zlib" version="1.2.8" />
16 </repository> 16 </repository>
17 </action> 17 </action>
18 18
19 <action type="shell_command"> 19 <action type="shell_command">
20 export HOME=$INSTALL_DIR &amp;&amp; python gemini_install.py $INSTALL_DIR $INSTALL_DIR --nodata --gemini-version 0.18.1 20 sed -i.bak -e 's/^gemini=0.18.1=py27_7/gemini=0.18.1=py27_2/g' ./versioning/0.18.1/requirements_conda.txt
21 </action>
22
23 <action type="shell_command">
24 export HOME=$INSTALL_DIR &amp;&amp; python ./gemini/scripts/gemini_install.py $INSTALL_DIR $INSTALL_DIR --nodata --gemini-version 0.18.1
21 </action> 25 </action>
22 26
23 <action type="set_environment"> 27 <action type="set_environment">
24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable> 28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable>
25 <environment_variable action="set_to" name="HOME">.</environment_variable> 29 <environment_variable action="set_to" name="HOME">.</environment_variable>