Mercurial > repos > iuc > package_cutadapt_1_8

comparison tool_dependencies.xml @ 0:e22171da67d9 draft default tip

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author iuc
date Mon, 06 Apr 2015 22:41:40 -0400
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-1:000000000000 0:e22171da67d9
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="cython" version="0.20.1">
4 <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="cutadapt" version="1.8">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">https://pypi.python.org/packages/source/c/cutadapt/cutadapt-1.8.tar.gz</action>
10 <action type="set_environment_for_install">
11 <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
12 <package name="cython" version="0.20.1" />
13 </repository>
14 </action>
15 <action type="shell_command">
16 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
17 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
18 </action>
19 <action type="set_environment">
20 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
21 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
22 <environment_variable action="set_to" name="CUTADAPT_ROOT_PATH">$INSTALL_DIR</environment_variable>
23 </action>
24 </actions>
25 </install>
26 <readme>
27 </readme>
28 </package>
29 </tool_dependency>