Mercurial > repos > iuc > package_ccat_3_0

changeset 0:4dad0e801b59 draft default tip

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Uploaded
author iuc
date Mon, 06 Apr 2015 15:46:06 -0400
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files tool_dependencies.xml
diffstat 1 files changed, 20 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Apr 06 15:46:06 2015 -0400
@@ -0,0 +1,20 @@
+<tool_dependency>
+    <package name="CCAT" version="3.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://cmb.gis.a-star.edu.sg/ChIPSeq/tools/CCAT3.0.tar.gz</action>
+                <action type="change_directory">src</action>
+                <action type="shell_command">./make</action>
+                <action type="move_file">
+                    <source>../bin/CCAT</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Downloading  and compiling CCAT. A Signal-Noise model for significance analysis of ChIP-seq with Negative Control.</readme>
+    </package>
+</tool_dependency>